Detailed information NTG1146431

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: NBC2815_RS16275
• Genome accession: NZ_LT853880
• Coordinates: 3513552..3514610 (-)
• Length: 352 a.a.
• NCBI ID: WP_088061966.1
• Uniprot ID: -
• Organism: Xanthomonas fragariae strain NBC2815
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3508552..3519610

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NBC2815_RS16250 (NBC2815_03242)	-	3508655..3509623 (-)	969	WP_088061959.1	IS5 family transposase	-
NBC2815_RS16255 (NBC2815_03243)	-	3509686..3511584 (-)	1899	WP_088061962.1	type IV pilus secretin PilQ family protein	-
NBC2815_RS16260 (NBC2815_03244)	-	3511599..3512138 (-)	540	WP_088061964.1	pilus assembly protein PilP	-
NBC2815_RS16265 (NBC2815_03245)	-	3512135..3512800 (-)	666	WP_002812408.1	type 4a pilus biogenesis protein PilO	-
NBC2815_RS16270 (NBC2815_03246)	-	3512797..3513552 (-)	756	WP_002812409.1	PilN domain-containing protein	-
NBC2815_RS16275 (NBC2815_03247)	comM	3513552..3514610 (-)	1059	WP_088061966.1	pilus assembly protein PilM	Machinery gene
NBC2815_RS16280 (NBC2815_03248)	-	3514729..3517251 (+)	2523	WP_087946507.1	penicillin-binding protein 1A	-
NBC2815_RS16285 (NBC2815_03249)	-	3517447..3518097 (+)	651	WP_088061968.1	hypothetical protein	-
NBC2815_RS16290 (NBC2815_03250)	-	3518210..3519499 (-)	1290	WP_002812413.1	citrate synthase	-

Sequence

Protein

• Length: 352 a.a.
• Molecular weight: 37699.31 Da
• Isoelectric Point: 4.4342

>NTDB_id=1146431 NBC2815_RS16275 WP_088061966.1 3513552..3514610(-) (comM) [Xanthomonas fragariae strain NBC2815]
MGLLRKSQSPLIGVDISSTAVKLLQLSRSGNRFRVDHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAMNRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDGDLEAQVELEATNYIPYPIEEVNLDFEVLGPLPNSPDMVQVLLAASRSENVELRQSSLELG
GLTAKVMDVEAFAVENAFALIASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQMFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALSRLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHALALDAPALMIATGLALRSFD

Nucleotide

• Length: 1059 bp

>NTDB_id=1146431 NBC2815_RS16275 WP_088061966.1 3513552..3514610(-) (comM) [Xanthomonas fragariae strain NBC2815]
GTGGGGCTTCTACGCAAGAGTCAATCGCCACTTATCGGTGTCGATATCAGTTCCACTGCGGTCAAGCTTTTGCAGCTGTC
GCGCAGCGGGAATCGTTTTCGCGTGGATCATTACGCAGTGGAACCATTGCCGCCGAATGCGGTCGTTGAAAAGAACATCG
TCGAAGTGGAGGCGGTCGGCGAAGCCATTCGCCGCGCCATGAACCGTTCCGGCAGTAAGGCCAAGAACGCGGCCGCAGCC
GTGGCCGGGTCGGCAGTGATCACCAAATTGATCCCGATGCCGGCTGATCTGGACGACGGCGATCTGGAAGCTCAGGTCGA
GCTGGAAGCCACCAATTACATCCCGTACCCGATCGAGGAAGTGAACCTCGACTTCGAGGTGCTTGGCCCGCTGCCCAACA
GTCCGGACATGGTCCAGGTGCTGCTGGCGGCGTCACGTTCGGAGAATGTGGAACTGCGCCAGTCGTCGCTGGAACTTGGC
GGCCTGACCGCCAAGGTGATGGACGTGGAGGCTTTTGCGGTCGAAAACGCGTTTGCCCTGATCGCCAGCGAACTGCCGGT
CGCCGCCGATGCGGTGGTCGCGCTGGTGGACATCGGCGCCACCATGACTACGCTGAGCGTGCTGCGCTCCGGTCGCAGTC
TGTATAGCCGCGAACAGATGTTCGGCGGCAAGCAACTGACCGATGAAGTGATGCGCCGTTATGGATTGACCTACGAAGAA
GCCGGGCTGGCCAAGCGTCAGGGCGGTTTGCCGGAGAGCTACGAGGTCGAGGTGCTGGAGCCGTTCAAGGAAGCAACGGT
GCAGCAGATCAGCCGTTTGCTGCAGTTCTTCTATGCGGGCAGCGAATTCAACCGCGTCGACTGCATCGTGCTGGCCGGCG
GTTGCGCCGCGCTTTCGCGCCTGCCGGAGATGGTGGAAGAGCAGCTCGGCGTGACCACCGTGGTCGCCAATCCGCTTGCC
CAGATGACCCTGGGCCCGAAGGTTCAGGCCCACGCGCTGGCGCTGGATGCGCCTGCATTGATGATCGCCACCGGCCTGGC
CCTGAGGAGCTTTGACTGA

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (13-351)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Acinetobacter nosocomialis M2	51.136	100	0.511
comM	Acinetobacter baylyi ADP1	50.997	99.716	0.509
pilM	Acinetobacter baumannii D1279779	50.852	100	0.509
pilM	Legionella pneumophila strain ERS1305867	46.176	100	0.463