Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DABAL43B_RS12370 Genome accession   NZ_LT799838
Coordinates   2902902..2903957 (-) Length   351 a.a.
NCBI ID   WP_079692677.1    Uniprot ID   A0A1U6GQ66
Organism   Psychrobacter sp. DAB_AL43B     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2897902..2908957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DABAL43B_RS12350 (DABAL43B_2475) pilQ 2898603..2900957 (-) 2355 WP_079692673.1 type IV pilus secretin PilQ -
  DABAL43B_RS12355 (DABAL43B_2476) - 2900985..2901518 (-) 534 WP_079692674.1 pilus assembly protein PilP -
  DABAL43B_RS12360 (DABAL43B_2477) - 2901518..2902252 (-) 735 WP_079692675.1 type 4a pilus biogenesis protein PilO -
  DABAL43B_RS12365 (DABAL43B_2478) - 2902249..2902902 (-) 654 WP_079692676.1 PilN domain-containing protein -
  DABAL43B_RS12370 (DABAL43B_2479) comM 2902902..2903957 (-) 1056 WP_079692677.1 type IV pilus assembly protein PilM Machinery gene
  DABAL43B_RS12375 (DABAL43B_2480) - 2904151..2906853 (+) 2703 WP_079692678.1 penicillin-binding protein 1A -
  DABAL43B_RS14285 (DABAL43B_2481) - 2906936..2907463 (-) 528 WP_079692679.1 DUF6586 family protein -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 38278.43 Da        Isoelectric Point: 4.3685

>NTDB_id=1146239 DABAL43B_RS12370 WP_079692677.1 2902902..2903957(-) (comM) [Psychrobacter sp. DAB_AL43B]
MRLFTSKSRHLIGVDICTTSVKLVDIQRQQGVFHLKSYGTEILPEGVVIDKLIIDTETVGNAIASLARRCQVSSSSAATA
VSGSAVITKVIDMDMVLNDVEREAQIRLDADQYVPYPLEDVNLDFEVLGPSLINDDMVQVLLAASRSENVDQRVDALTFG
GLQTKVMDIESHAIERAFGLMADSLPNLPDLVALVDIGHNQTTLYVAKNGEFIYSREQLFGGSQLTEAIQNRYGLSAEEA
TISKRERTLPDDYYSDVLTPFIENIIQQITRSLQFYFSSSQYSSIDHVVLAGGSSSIAGLAGMAQQRLGVPVSIANPFIN
MTIAPHIDNEQLAIDSPSLMAACGLALRSFD

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=1146239 DABAL43B_RS12370 WP_079692677.1 2902902..2903957(-) (comM) [Psychrobacter sp. DAB_AL43B]
GTGAGGCTATTTACTTCTAAGAGTCGACATTTAATTGGCGTGGATATTTGTACCACCTCAGTAAAGTTGGTCGACATACA
GCGCCAACAAGGCGTTTTTCATTTAAAATCTTATGGTACTGAAATACTACCAGAAGGCGTAGTCATCGACAAACTCATTA
TAGACACTGAGACTGTAGGGAATGCCATAGCAAGCTTGGCTCGACGTTGCCAAGTTTCGAGTAGCAGCGCTGCAACCGCA
GTCTCAGGGTCAGCGGTGATTACTAAAGTCATCGATATGGATATGGTGCTCAATGATGTGGAGCGCGAAGCTCAAATTCG
TCTGGATGCTGATCAATATGTGCCTTATCCATTAGAAGATGTTAATTTGGATTTTGAGGTATTAGGTCCGTCTCTTATAA
ACGACGACATGGTACAAGTGCTACTCGCCGCTTCTCGCTCGGAAAACGTCGACCAAAGGGTTGACGCCTTAACGTTTGGT
GGTCTACAAACTAAAGTCATGGATATTGAGTCTCATGCGATCGAACGTGCTTTTGGTTTGATGGCAGACAGTTTGCCAAA
TCTGCCAGATTTAGTGGCTTTAGTCGATATTGGGCATAATCAAACGACTTTATATGTTGCTAAAAACGGTGAGTTTATTT
ATAGCCGAGAGCAATTATTTGGTGGAAGTCAGCTAACTGAGGCGATACAGAACCGTTATGGACTATCGGCTGAAGAAGCC
ACTATTAGTAAACGTGAGCGTACTTTACCTGATGATTACTATTCTGATGTATTGACCCCATTTATAGAAAATATTATTCA
ACAGATTACTCGTTCGTTGCAATTTTACTTCTCCTCAAGCCAATATAGCAGTATTGATCATGTGGTACTTGCTGGTGGCA
GTAGCTCTATTGCTGGTCTTGCTGGTATGGCCCAACAGAGATTGGGCGTGCCTGTTAGCATAGCAAATCCGTTTATCAAC
ATGACCATTGCTCCGCATATCGATAATGAGCAGCTGGCGATTGATTCACCAAGCTTAATGGCCGCTTGCGGTCTAGCGTT
AAGGAGCTTTGACTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1U6GQ66

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

50.712

100

0.507
  pilM Acinetobacter baumannii D1279779

50.427

100

0.504
  comM Acinetobacter baylyi ADP1

47.578

100

0.476
  pilM Legionella pneumophila strain ERS1305867

41.36

100

0.416

Multiple sequence alignment