Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DABAL43B_RS11245 Genome accession   NZ_LT799838
Coordinates   2647969..2648640 (-) Length   223 a.a.
NCBI ID   WP_079692453.1    Uniprot ID   A0A1U6GPI5
Organism   Psychrobacter sp. DAB_AL43B     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2642969..2653640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DABAL43B_RS11230 (DABAL43B_2251) - 2645184..2646086 (-) 903 WP_079692450.1 type II secretion system protein N -
  DABAL43B_RS11235 (DABAL43B_2252) gspN 2646087..2646911 (-) 825 WP_079692451.1 type II secretion system protein N -
  DABAL43B_RS11240 (DABAL43B_2253) - 2647162..2647485 (-) 324 WP_079692452.1 H-NS family nucleoid-associated regulatory protein -
  DABAL43B_RS11245 (DABAL43B_2254) ssb 2647969..2648640 (-) 672 WP_079692453.1 single-stranded DNA-binding protein Machinery gene
  DABAL43B_RS11250 (DABAL43B_2255) - 2648749..2650113 (-) 1365 WP_079692454.1 MFS transporter -
  DABAL43B_RS11255 (DABAL43B_2256) uvrA 2650727..2653633 (+) 2907 WP_079692455.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 23616.42 Da        Isoelectric Point: 5.9190

>NTDB_id=1146236 DABAL43B_RS11245 WP_079692453.1 2647969..2648640(-) (ssb) [Psychrobacter sp. DAB_AL43B]
MRGVNKVIIIGNLGADPEARQFNNGGGVTNISVATSEQWTDKQSGEKREATEWHRISLFNRLGEIAAQYLRKGSKVYIEG
SLRTRKYQDPNGQDRYITEIRAEQMQMLDGATGGSNDGGGFGGGQNQGQGSYGNQGGGFGGQNQGQGGQNSYGQPANNQP
AQQGGYNQGGGAAQGMSQGSNQNSFNNQNAPAQQNQFNKPTQAPAQSKPTAMPDGPVDDDIPF

Nucleotide


Download         Length: 672 bp        

>NTDB_id=1146236 DABAL43B_RS11245 WP_079692453.1 2647969..2648640(-) (ssb) [Psychrobacter sp. DAB_AL43B]
ATGCGCGGTGTAAATAAAGTTATCATCATCGGTAACCTCGGTGCAGACCCTGAGGCACGTCAATTCAACAATGGCGGTGG
CGTAACCAATATTTCGGTCGCCACTTCTGAGCAGTGGACAGACAAGCAGAGCGGTGAAAAAAGAGAAGCAACTGAATGGC
ATCGTATTTCATTGTTCAATCGTTTAGGCGAAATCGCCGCGCAGTATCTTCGTAAAGGTAGTAAAGTTTATATCGAAGGT
AGCTTGCGTACGCGTAAATATCAGGATCCAAATGGACAAGACCGTTATATCACTGAGATTCGCGCTGAACAAATGCAAAT
GCTAGACGGTGCGACTGGCGGTAGTAATGATGGTGGCGGATTTGGTGGCGGTCAGAACCAAGGTCAAGGTAGCTATGGCA
ATCAGGGCGGTGGGTTTGGTGGTCAAAACCAAGGTCAAGGTGGCCAGAACAGTTATGGTCAACCAGCAAACAATCAGCCA
GCTCAACAAGGCGGTTATAACCAAGGTGGTGGTGCAGCTCAAGGTATGTCACAAGGTAGCAATCAAAACAGCTTTAACAA
TCAGAATGCGCCCGCTCAGCAGAACCAATTTAATAAGCCGACTCAAGCACCGGCGCAGTCTAAGCCTACCGCCATGCCTG
ACGGTCCTGTAGATGATGATATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1U6GPI5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.214

100

0.484
  ssb Vibrio cholerae strain A1552

42.982

100

0.439
  ssb Neisseria meningitidis MC58

38.636

98.655

0.381
  ssb Neisseria gonorrhoeae MS11

37.5

100

0.377

Multiple sequence alignment