Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   BUC38_RS09745 Genome accession   NZ_LT671674
Coordinates   1996761..1997426 (-) Length   221 a.a.
NCBI ID   WP_002941737.1    Uniprot ID   -
Organism   Streptococcus suis strain LS9N     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1991761..2002426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BUC38_RS09740 raiA 1996141..1996683 (-) 543 WP_014637536.1 ribosome-associated translation inhibitor RaiA -
  BUC38_RS09745 comFC/cflB 1996761..1997426 (-) 666 WP_002941737.1 ComF family protein Machinery gene
  BUC38_RS09750 comFA/cflA 1997419..1998711 (-) 1293 WP_044673208.1 DEAD/DEAH box helicase Machinery gene
  BUC38_RS09755 - 1998768..1999400 (+) 633 WP_044690100.1 YigZ family protein -
  BUC38_RS09760 cysK 1999490..2000416 (+) 927 WP_044690101.1 cysteine synthase A -
  BUC38_RS09765 - 2000447..2000818 (-) 372 WP_002937017.1 S1 RNA-binding domain-containing protein -
  BUC38_RS09770 - 2000820..2002220 (-) 1401 WP_044690103.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25788.71 Da        Isoelectric Point: 8.6258

>NTDB_id=1146008 BUC38_RS09745 WP_002941737.1 1996761..1997426(-) (comFC/cflB) [Streptococcus suis strain LS9N]
MSNCLLCAQAMKNKTRFSDLIFFSKEKSGICEECFSTFEEIAEQHCPHCYKNGESESCKDCQYWQNQGKPVVHTALYRYN
QAMAHYFSRYKFQGDYVLRNIFAKKLRIALSQFPDYTIVPIPISQKRLLERGFNQVEGLLSATNIPYQSLLGKYESQKQS
SKNRAERLEAKQMFYLLDEKEVPEKILLFDDIYTTGATIQLAVELFMKIGRKEIKTFSLTR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=1146008 BUC38_RS09745 WP_002941737.1 1996761..1997426(-) (comFC/cflB) [Streptococcus suis strain LS9N]
ATGTCTAATTGTCTATTGTGCGCCCAAGCTATGAAAAATAAAACAAGATTTTCAGATCTCATCTTCTTTAGTAAAGAAAA
ATCGGGTATATGTGAAGAATGTTTTTCGACTTTTGAGGAAATAGCAGAGCAACACTGTCCACATTGTTATAAAAATGGAG
AATCGGAAAGTTGCAAGGATTGTCAGTACTGGCAGAATCAAGGGAAACCAGTTGTTCATACAGCTTTGTACCGATATAAT
CAAGCGATGGCACATTATTTTAGTCGCTACAAATTTCAAGGAGACTATGTTTTAAGAAATATTTTTGCTAAAAAGCTTAG
AATAGCGTTAAGCCAATTTCCTGACTACACAATTGTTCCCATACCAATTAGTCAAAAACGACTATTAGAACGCGGTTTTA
ATCAAGTGGAAGGACTTTTGAGTGCTACAAATATTCCCTATCAGTCCCTTCTTGGAAAGTATGAAAGCCAAAAACAATCA
TCTAAAAATCGTGCAGAGAGACTAGAAGCAAAACAGATGTTCTATCTATTAGATGAAAAAGAAGTGCCAGAAAAAATATT
ATTATTCGACGATATATATACAACAGGAGCCACAATCCAACTTGCTGTAGAACTTTTCATGAAAATTGGTAGGAAAGAAA
TCAAAACATTTTCACTAACACGATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

49.083

98.643

0.484
  comFC/cflB Streptococcus mitis NCTC 12261

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae TIGR4

48.624

98.643

0.48
  comFC/cflB Streptococcus pneumoniae Rx1

48.624

98.643

0.48
  comFC/cflB Streptococcus pneumoniae D39

48.624

98.643

0.48
  comFC/cflB Streptococcus pneumoniae R6

48.624

98.643

0.48

Multiple sequence alignment