Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   BUC38_RS03925 Genome accession   NZ_LT671674
Coordinates   784446..785387 (+) Length   313 a.a.
NCBI ID   WP_044689575.1    Uniprot ID   A0A0Z8HY07
Organism   Streptococcus suis strain LS9N     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 779446..790387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BUC38_RS03910 - 780831..781577 (+) 747 WP_044689571.1 hypothetical protein -
  BUC38_RS03915 metG 781786..783789 (+) 2004 WP_044689572.1 methionine--tRNA ligase -
  BUC38_RS03920 - 783819..784385 (-) 567 WP_044689574.1 GNAT family protein -
  BUC38_RS03925 coiA 784446..785387 (+) 942 WP_044689575.1 competence protein CoiA family protein Machinery gene
  BUC38_RS03930 pepF 785616..787418 (+) 1803 WP_044689577.1 oligoendopeptidase F Regulator
  BUC38_RS03935 - 787420..787863 (+) 444 WP_029180004.1 hypothetical protein -
  BUC38_RS03940 - 787874..788422 (+) 549 WP_044689578.1 DUF6630 family protein -
  BUC38_RS03945 - 788497..789216 (+) 720 WP_044672599.1 O-methyltransferase -
  BUC38_RS03950 prsA 789279..790280 (+) 1002 WP_044689579.1 peptidylprolyl isomerase PrsA -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 36525.31 Da        Isoelectric Point: 8.8782

>NTDB_id=1145996 BUC38_RS03925 WP_044689575.1 784446..785387(+) (coiA) [Streptococcus suis strain LS9N]
MLVALDEDRQIFNLLENPAPQGRYSCPGCGGLVRYKSGKVLRSHFAHVTLRDCHYFSENESAQHLSLKSCLYSWLINAEQ
VELEKCLPQIGQVADLLVNDHLAVEVQCSSLPISRLQVRTQTYRESGYQVLWLLGKDLWLKERLTNLHKQFLSFSMNMGF
HLWELDNEKKELRLRYLIHEDLRGKVHGLTKVFPFGQGNLLDILRLPFAKQTLSSMTCPMDEDLPRYIAQQLYYKSPKWL
ALQAEAYGRGENLLTKTAFDWYPHIRLPRSAIGFAQIRQDLTPIYQAFDLFYDKAKDKRKQILYPPIIYRKPM

Nucleotide


Download         Length: 942 bp        

>NTDB_id=1145996 BUC38_RS03925 WP_044689575.1 784446..785387(+) (coiA) [Streptococcus suis strain LS9N]
ATGTTAGTTGCACTTGATGAAGACCGACAAATTTTTAATCTTTTGGAAAATCCTGCGCCACAAGGTCGCTATTCCTGTCC
AGGTTGTGGAGGCCTGGTCCGATACAAATCCGGAAAAGTTCTGCGTTCGCATTTTGCCCATGTCACCCTGCGGGATTGCC
ACTATTTTTCCGAGAATGAGTCAGCCCAGCACCTGTCACTTAAGTCTTGTCTGTACAGTTGGTTAATCAATGCCGAACAA
GTTGAACTTGAAAAATGCCTGCCACAGATTGGTCAGGTAGCGGATCTATTGGTCAATGATCATTTGGCTGTGGAAGTCCA
ATGTTCCAGTCTACCCATTTCTCGTTTGCAAGTTCGGACACAAACCTATCGTGAATCAGGTTATCAGGTTCTCTGGTTAC
TTGGCAAGGATTTGTGGCTCAAGGAACGACTGACCAATTTGCACAAGCAATTTCTCTCTTTTAGTATGAACATGGGTTTT
CACCTCTGGGAATTGGATAACGAGAAAAAAGAATTGCGGCTCCGTTACCTCATTCATGAAGATTTGCGAGGTAAGGTACA
CGGTCTTACGAAAGTCTTTCCCTTTGGTCAGGGAAACTTACTGGACATATTACGTTTACCTTTTGCCAAGCAAACCCTAT
CTAGCATGACTTGTCCAATGGATGAGGATTTGCCTCGCTACATTGCTCAACAGCTTTATTACAAATCCCCCAAATGGCTC
GCCCTGCAAGCAGAGGCTTATGGACGTGGAGAAAATCTACTGACCAAGACAGCATTTGACTGGTATCCCCACATCCGTCT
ACCCCGCTCTGCTATTGGCTTTGCCCAAATTCGCCAAGACCTGACACCGATTTACCAAGCATTTGATCTGTTTTACGACA
AAGCAAAAGATAAGAGAAAACAAATCTTGTATCCACCTATCATTTATAGAAAACCAATGTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(22-232)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Z8HY07

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

52.564

99.681

0.524
  coiA Streptococcus pneumoniae TIGR4

51.282

99.681

0.511
  coiA Streptococcus pneumoniae Rx1

51.282

99.681

0.511
  coiA Streptococcus pneumoniae D39

51.282

99.681

0.511
  coiA Streptococcus pneumoniae R6

51.282

99.681

0.511
  coiA Lactococcus lactis subsp. cremoris KW2

42.812

100

0.438

Multiple sequence alignment