Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   APCICONF2801_RS01865 Genome accession   NZ_LT667503
Coordinates   408811..409347 (-) Length   178 a.a.
NCBI ID   WP_075432303.1    Uniprot ID   -
Organism   Buchnera aphidicola (Cinara confinis) strain BCiconfinis voucher 2801     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 403811..414347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APCICONF2801_RS01835 (CINCONF2801_RS01845) rpe 404277..404948 (-) 672 WP_075432291.1 ribulose-phosphate 3-epimerase -
  APCICONF2801_RS01840 (CINCONF2801_RS01850) aroB 405056..406162 (-) 1107 WP_075432294.1 3-dehydroquinate synthase -
  APCICONF2801_RS01845 (CINCONF2801_RS01855) aroK 406198..406740 (-) 543 WP_075432297.1 shikimate kinase AroK -
  APCICONF2801_RS01855 (CINCONF2801_RS01865) - 407280..407861 (-) 582 WP_075432300.1 NfuA family Fe-S biogenesis protein -
  APCICONF2801_RS01860 (CINCONF2801_RS01870) - 408006..408779 (+) 774 WP_075432442.1 alpha/beta fold hydrolase -
  APCICONF2801_RS01865 (CINCONF2801_RS01875) ssb 408811..409347 (-) 537 WP_075432303.1 single-stranded DNA-binding protein Machinery gene
  APCICONF2801_RS01870 (CINCONF2801_RS01880) dusA 409629..410648 (+) 1020 WP_075432306.1 tRNA dihydrouridine(20/20a) synthase DusA -
  APCICONF2801_RS01875 (CINCONF2801_RS01885) dnaB 410780..412168 (+) 1389 WP_082252736.1 replicative DNA helicase -
  APCICONF2801_RS01880 (CINCONF2801_RS01890) ruvX 412320..412736 (+) 417 WP_075432311.1 Holliday junction resolvase RuvX -
  APCICONF2801_RS01885 (CINCONF2801_RS01895) trmB 412923..413624 (-) 702 WP_075432314.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19891.34 Da        Isoelectric Point: 7.0187

>NTDB_id=1145927 APCICONF2801_RS01865 WP_075432303.1 408811..409347(-) (ssb) [Buchnera aphidicola (Cinara confinis) strain BCiconfinis voucher 2801]
MASKGVNKAILIGNLGQDPDLRYMPNGSAVTNINIATSDTWKDKNTGETREKTEWHRVVLFGKLAEIAGKYLKKGAQIYI
EGSLQTRKWQDQNGIDRYTTEIIVSVTGTMQMLGNRNTGTLNNPENISKFIKKPNIKDNNPLDDLESLSNVPSQENNQKS
NLVKSASKIDFDDDDMPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=1145927 APCICONF2801_RS01865 WP_075432303.1 408811..409347(-) (ssb) [Buchnera aphidicola (Cinara confinis) strain BCiconfinis voucher 2801]
ATGGCTAGCAAAGGTGTTAATAAAGCTATTTTAATTGGTAATTTAGGTCAAGATCCAGACTTGCGATATATGCCTAACGG
AAGTGCTGTAACTAATATTAATATAGCGACTTCTGATACATGGAAAGATAAAAATACAGGGGAAACACGAGAAAAAACAG
AATGGCACCGTGTTGTTTTATTTGGTAAACTAGCTGAAATTGCAGGAAAATATTTAAAAAAAGGCGCACAAATATATATT
GAAGGTTCTTTACAAACTCGTAAATGGCAAGATCAAAATGGGATAGACCGTTATACTACCGAAATTATTGTTAGTGTAAC
TGGTACAATGCAAATGTTAGGCAATCGAAATACTGGAACTTTAAACAATCCTGAAAATATTTCAAAATTTATAAAAAAAC
CAAATATTAAAGATAATAATCCTTTAGATGATCTTGAATCTTTATCTAACGTTCCTTCTCAAGAAAATAATCAAAAATCT
AATTTAGTTAAATCTGCTTCAAAAATAGATTTTGATGATGACGATATGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.476

100

0.562
  ssb Glaesserella parasuis strain SC1401

45.161

100

0.472
  ssb Neisseria meningitidis MC58

41.899

100

0.421
  ssb Neisseria gonorrhoeae MS11

41.899

100

0.421

Multiple sequence alignment