Detailed information    

insolico Bioinformatically predicted

Overview

Name   lpp1977   Type   Machinery gene
Locus tag   BT137_RS09390 Genome accession   NZ_LT632617
Coordinates   2051628..2052434 (-) Length   268 a.a.
NCBI ID   WP_050566929.1    Uniprot ID   -
Organism   Legionella pneumophila strain ST42 isolate ST42     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2046628..2057434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BT137_RS09360 (EUL120_01866) - 2047077..2047727 (-) 651 WP_027265084.1 lysoplasmalogenase -
  BT137_RS09365 (EUL120_01867) - 2047797..2048297 (-) 501 WP_027265083.1 hypothetical protein -
  BT137_RS09375 (EUL120_01868) - 2048790..2049650 (+) 861 WP_027265082.1 polysaccharide deacetylase family protein -
  BT137_RS09380 (EUL120_01869) - 2049768..2050964 (-) 1197 WP_027265081.1 murein transglycosylase A -
  BT137_RS09385 (EUL120_01870) lpp1976 2051074..2051631 (-) 558 WP_038838932.1 hypothetical protein Machinery gene
  BT137_RS09390 (EUL120_01871) lpp1977 2051628..2052434 (-) 807 WP_050566929.1 PilW family protein Machinery gene
  BT137_RS09395 (EUL120_01872) lpp1978 2052373..2052687 (-) 315 WP_011215961.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  BT137_RS09400 (EUL120_01873) hisC 2052847..2053956 (+) 1110 WP_038838933.1 histidinol-phosphate transaminase -
  BT137_RS09405 (EUL120_01874) - 2053993..2054334 (+) 342 WP_011215963.1 4a-hydroxytetrahydrobiopterin dehydratase -
  BT137_RS09410 (EUL120_01875) secF 2054524..2055441 (-) 918 WP_010947716.1 protein translocase subunit SecF -
  BT137_RS09415 (EUL120_01876) secD 2055454..2057310 (-) 1857 WP_010947717.1 protein translocase subunit SecD -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 31281.31 Da        Isoelectric Point: 8.4314

>NTDB_id=1145626 BT137_RS09390 WP_050566929.1 2051628..2052434(-) (lpp1977) [Legionella pneumophila strain ST42 isolate ST42]
MLHGLKKASPLFAPMSWMLIEMGRQTGFSLSEMLISLFLASIITITLTQFYIRSKSQYLKAQEQLEINFDLLWIGDLLSD
SIRKAGFTPCVSIEKLKTFDSRHAERKIINFQIENMPQVQLRINRMSDVYTEVANFMSPTQIVIEESVISNIKHPLIISD
CRQGEVHTVSKIDKLSNGYQITLKKPLQFRYEEIAYLGEWLEETWFTKQNEKGEKTLHYKLFQTEELSPFIHEFYVTRRL
IKERSVLDFSIGSDKETLRKISVSVRNL

Nucleotide


Download         Length: 807 bp        

>NTDB_id=1145626 BT137_RS09390 WP_050566929.1 2051628..2052434(-) (lpp1977) [Legionella pneumophila strain ST42 isolate ST42]
ATGTTACATGGTTTAAAAAAAGCCAGTCCATTATTCGCTCCTATGAGCTGGATGCTAATTGAAATGGGAAGACAAACAGG
ATTTAGTTTATCTGAGATGCTAATTAGTCTTTTTCTGGCAAGTATTATAACGATAACCCTTACCCAGTTTTATATAAGAA
GCAAGTCTCAATACCTAAAGGCACAAGAACAGTTAGAAATTAATTTTGATTTGCTGTGGATTGGTGATTTACTAAGCGAC
AGTATTAGAAAGGCTGGATTTACTCCATGTGTAAGTATCGAAAAATTAAAAACTTTTGATTCTCGACATGCAGAGAGGAA
AATAATTAATTTTCAAATTGAAAATATGCCACAAGTTCAACTTCGTATTAACAGAATGAGTGATGTTTATACCGAAGTGG
CGAATTTTATGAGCCCAACACAAATAGTGATTGAAGAGTCAGTAATATCAAATATAAAACACCCATTAATTATTTCTGAT
TGCCGGCAAGGAGAAGTACATACAGTTTCAAAAATAGATAAACTAAGCAATGGATATCAAATTACATTAAAAAAACCACT
GCAGTTTCGATACGAAGAAATTGCTTATTTGGGAGAGTGGCTTGAAGAAACATGGTTTACTAAACAAAATGAAAAGGGTG
AAAAGACATTACATTACAAACTGTTTCAAACAGAAGAATTAAGTCCATTCATTCATGAATTTTATGTTACCAGACGTCTT
ATCAAAGAGAGGTCAGTATTGGATTTTTCAATTGGTAGCGATAAGGAAACGCTACGTAAAATCAGTGTTTCGGTACGAAA
TTTATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lpp1977 Legionella pneumophila str. Paris

95.149

100

0.951
  lpp1977 Legionella pneumophila strain ERS1305867

95.149

100

0.951

Multiple sequence alignment