Detailed information    

insolico Bioinformatically predicted

Overview

Name   lpp1976   Type   Machinery gene
Locus tag   BT137_RS09385 Genome accession   NZ_LT632617
Coordinates   2051074..2051631 (-) Length   185 a.a.
NCBI ID   WP_038838932.1    Uniprot ID   -
Organism   Legionella pneumophila strain ST42 isolate ST42     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2046074..2056631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BT137_RS09355 (EUL120_01865) - 2046235..2046858 (-) 624 WP_027265085.1 hypothetical protein -
  BT137_RS09360 (EUL120_01866) - 2047077..2047727 (-) 651 WP_027265084.1 lysoplasmalogenase -
  BT137_RS09365 (EUL120_01867) - 2047797..2048297 (-) 501 WP_027265083.1 hypothetical protein -
  BT137_RS09375 (EUL120_01868) - 2048790..2049650 (+) 861 WP_027265082.1 polysaccharide deacetylase family protein -
  BT137_RS09380 (EUL120_01869) - 2049768..2050964 (-) 1197 WP_027265081.1 murein transglycosylase A -
  BT137_RS09385 (EUL120_01870) lpp1976 2051074..2051631 (-) 558 WP_038838932.1 hypothetical protein Machinery gene
  BT137_RS09390 (EUL120_01871) lpp1977 2051628..2052434 (-) 807 WP_050566929.1 PilW family protein Machinery gene
  BT137_RS09395 (EUL120_01872) lpp1978 2052373..2052687 (-) 315 WP_011215961.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  BT137_RS09400 (EUL120_01873) hisC 2052847..2053956 (+) 1110 WP_038838933.1 histidinol-phosphate transaminase -
  BT137_RS09405 (EUL120_01874) - 2053993..2054334 (+) 342 WP_011215963.1 4a-hydroxytetrahydrobiopterin dehydratase -
  BT137_RS09410 (EUL120_01875) secF 2054524..2055441 (-) 918 WP_010947716.1 protein translocase subunit SecF -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 21651.12 Da        Isoelectric Point: 6.9395

>NTDB_id=1145625 BT137_RS09385 WP_038838932.1 2051074..2051631(-) (lpp1976) [Legionella pneumophila strain ST42 isolate ST42]
MKKTDSGFILLMTLCITFLMSLLVLASLQLIFLQYKALNSQETFHQNFYQLEHWMMRLARSPLLYAGMDCYMQKDYGANK
IANELVNNKGCLLILNQKKYRYFIEDLNEFSCLVLNKDGQKYASHHFRFTVLQDEEHGESAIMQLRFIKLGSNLSSCPEE
EIQVKEGVSSWRYLPDYKNFEILTG

Nucleotide


Download         Length: 558 bp        

>NTDB_id=1145625 BT137_RS09385 WP_038838932.1 2051074..2051631(-) (lpp1976) [Legionella pneumophila strain ST42 isolate ST42]
ATGAAAAAAACCGATTCCGGTTTCATTCTTTTAATGACGCTCTGTATAACTTTCTTGATGAGCTTATTGGTTTTGGCAAG
CCTCCAACTGATATTCTTGCAATACAAAGCACTCAATTCACAGGAGACATTTCATCAAAATTTCTATCAGTTGGAACATT
GGATGATGCGACTGGCGCGTTCACCGTTATTGTATGCAGGTATGGATTGTTATATGCAAAAAGATTATGGAGCTAATAAA
ATAGCAAACGAGTTGGTTAACAATAAAGGATGTTTGCTCATATTAAATCAGAAAAAATACAGATATTTTATTGAGGACCT
TAACGAGTTTTCTTGCTTGGTTCTTAATAAAGATGGGCAGAAATATGCTTCTCACCATTTTAGATTCACCGTATTACAAG
ACGAGGAGCATGGCGAATCTGCTATCATGCAATTAAGGTTTATCAAATTGGGTAGCAATTTGTCCTCTTGTCCAGAAGAG
GAAATACAGGTGAAGGAAGGGGTAAGCAGCTGGAGATACTTGCCAGATTATAAAAATTTTGAAATATTAACTGGTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lpp1976 Legionella pneumophila str. Paris

97.838

100

0.978
  lpp1976 Legionella pneumophila strain ERS1305867

96.757

100

0.968

Multiple sequence alignment