Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BT137_RS01330 Genome accession   NZ_LT632617
Coordinates   276142..276621 (-) Length   159 a.a.
NCBI ID   WP_038837345.1    Uniprot ID   -
Organism   Legionella pneumophila strain ST42 isolate ST42     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 271142..281621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BT137_RS01290 (EUL120_00259) rplO 271274..271708 (+) 435 WP_010946097.1 50S ribosomal protein L15 -
  BT137_RS01295 (EUL120_00260) secY 271711..273039 (+) 1329 WP_014840959.1 preprotein translocase subunit SecY -
  BT137_RS01300 rpmJ 273056..273169 (+) 114 WP_010946099.1 50S ribosomal protein L36 -
  BT137_RS01305 (EUL120_00261) rpsM 273247..273603 (+) 357 WP_010946100.1 30S ribosomal protein S13 -
  BT137_RS01310 (EUL120_00262) rpsK 273627..274025 (+) 399 WP_010946101.1 30S ribosomal protein S11 -
  BT137_RS01315 (EUL120_00263) rpsD 274042..274662 (+) 621 WP_010946102.1 30S ribosomal protein S4 -
  BT137_RS01320 (EUL120_00264) - 274681..275673 (+) 993 WP_010946103.1 DNA-directed RNA polymerase subunit alpha -
  BT137_RS01325 (EUL120_00265) rplQ 275692..276075 (+) 384 WP_011214629.1 50S ribosomal protein L17 -
  BT137_RS01330 (EUL120_00266) ssb 276142..276621 (-) 480 WP_038837345.1 single-stranded DNA-binding protein Machinery gene
  BT137_RS01335 (EUL120_00267) - 276703..278070 (-) 1368 WP_038837347.1 MFS transporter -
  BT137_RS01340 (EUL120_00268) fabL 278232..278990 (+) 759 WP_038837349.1 enoyl-[acyl-carrier-protein] reductase FabL -
  BT137_RS01345 (EUL120_00269) - 279061..279474 (+) 414 WP_027264841.1 acyl carrier protein -
  BT137_RS01350 (EUL120_00270) - 279474..280370 (+) 897 WP_027264840.1 hydroxymyristoyl-ACP dehydratase -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17683.51 Da        Isoelectric Point: 4.6616

>NTDB_id=1145599 BT137_RS01330 WP_038837345.1 276142..276621(-) (ssb) [Legionella pneumophila strain ST42 isolate ST42]
MARGINKVILVGNVGADPDVRYLPNGNAVTTLSVATSETWKDKTTGEKQDRTEWHRVVCFNRLGEIAGEYIRKGSKLYVE
GSLRTRKWQDQQGQDRYTTEIVASDIQMLDSKGSSATNYDDMPSFQGTSTPQQASTKNQVIPTSTAQDAFDELDDDIPF

Nucleotide


Download         Length: 480 bp        

>NTDB_id=1145599 BT137_RS01330 WP_038837345.1 276142..276621(-) (ssb) [Legionella pneumophila strain ST42 isolate ST42]
ATGGCAAGAGGAATAAATAAAGTAATACTTGTTGGTAATGTAGGGGCAGATCCTGATGTAAGGTATTTGCCTAACGGAAA
TGCTGTTACTACACTTTCAGTTGCTACCAGTGAAACATGGAAAGACAAAACAACAGGTGAAAAACAAGATAGAACTGAAT
GGCACAGAGTAGTCTGTTTTAATCGTCTGGGTGAAATAGCTGGAGAATACATTCGCAAAGGTTCCAAGCTATATGTCGAA
GGGAGCTTAAGAACAAGAAAATGGCAAGATCAACAGGGCCAAGATAGATATACAACTGAAATTGTTGCGTCTGACATTCA
AATGCTCGATAGCAAAGGAAGTAGTGCTACTAATTACGACGACATGCCTTCATTTCAGGGAACCTCTACCCCTCAACAAG
CTTCAACAAAAAATCAAGTAATACCAACATCTACTGCACAAGATGCTTTTGATGAATTAGATGATGACATACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.273

100

0.579
  ssb Vibrio cholerae strain A1552

49.143

100

0.541
  ssb Neisseria gonorrhoeae MS11

39.205

100

0.434
  ssb Neisseria meningitidis MC58

38.636

100

0.428

Multiple sequence alignment