Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BQ6063_RS01910 Genome accession   NZ_LT632615
Coordinates   418535..419014 (-) Length   159 a.a.
NCBI ID   WP_011213016.1    Uniprot ID   A0AAV2UTR4
Organism   Legionella pneumophila strain ST23 isolate ST23     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 413535..424014
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BQ6063_RS01870 (EUL28_00362) rplO 413667..414101 (+) 435 WP_010946097.1 50S ribosomal protein L15 -
  BQ6063_RS01875 (EUL28_00363) secY 414104..415432 (+) 1329 WP_011945551.1 preprotein translocase subunit SecY -
  BQ6063_RS01880 (H044120014_RS01900) rpmJ 415449..415562 (+) 114 WP_010946099.1 50S ribosomal protein L36 -
  BQ6063_RS01885 (H044120014_RS01905) rpsM 415640..415996 (+) 357 WP_010946100.1 30S ribosomal protein S13 -
  BQ6063_RS01890 (EUL28_00365) rpsK 416020..416418 (+) 399 WP_010946101.1 30S ribosomal protein S11 -
  BQ6063_RS01895 (EUL28_00366) rpsD 416435..417055 (+) 621 WP_010946102.1 30S ribosomal protein S4 -
  BQ6063_RS01900 (EUL28_00367) - 417074..418066 (+) 993 WP_011213014.1 DNA-directed RNA polymerase subunit alpha -
  BQ6063_RS01905 (EUL28_00368) rplQ 418085..418468 (+) 384 WP_011213015.1 50S ribosomal protein L17 -
  BQ6063_RS01910 (EUL28_00369) ssb 418535..419014 (-) 480 WP_011213016.1 single-stranded DNA-binding protein Machinery gene
  BQ6063_RS01915 (EUL28_00370) - 419098..420465 (-) 1368 WP_011213017.1 MFS transporter -
  BQ6063_RS01920 (EUL28_00371) fabL 420627..421385 (+) 759 WP_027226452.1 enoyl-[acyl-carrier-protein] reductase FabL -
  BQ6063_RS01925 (EUL28_00372) - 421456..421869 (+) 414 WP_010946108.1 acyl carrier protein -
  BQ6063_RS01930 (EUL28_00373) - 421869..422765 (+) 897 WP_011213019.1 hydroxymyristoyl-ACP dehydratase -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17629.38 Da        Isoelectric Point: 4.6616

>NTDB_id=1145517 BQ6063_RS01910 WP_011213016.1 418535..419014(-) (ssb) [Legionella pneumophila strain ST23 isolate ST23]
MARGINKVILVGNVGADPDVRYLPNGNAVTTLSVATSETWKDKTTGEKQDRTEWHRVVCFNRLGEIAGEYIRKGSKLYVE
GSLRTRKWQDQQGQDRYTTEIVASDIQMLDSKGSSATNYDDMPSFQGSSTPQQASTKNQATPTSTAQDAFDELDDDIPF

Nucleotide


Download         Length: 480 bp        

>NTDB_id=1145517 BQ6063_RS01910 WP_011213016.1 418535..419014(-) (ssb) [Legionella pneumophila strain ST23 isolate ST23]
ATGGCAAGAGGAATAAATAAAGTAATACTTGTTGGTAATGTAGGGGCAGATCCTGATGTAAGGTATTTGCCTAACGGAAA
TGCTGTTACTACACTTTCAGTTGCTACCAGTGAAACATGGAAAGATAAAACGACAGGTGAAAAACAAGATAGAACTGAAT
GGCACAGAGTTGTCTGTTTTAATCGTCTGGGTGAAATAGCCGGTGAATACATTCGCAAAGGTTCCAAGCTATATGTCGAA
GGGAGCTTAAGAACAAGAAAATGGCAAGATCAACAGGGTCAAGATAGATATACAACTGAAATTGTTGCGTCTGATATACA
AATGCTCGATAGCAAAGGAAGTAGTGCTACTAATTACGACGACATGCCTTCATTTCAGGGATCCTCTACCCCTCAACAAG
CTTCAACAAAGAATCAAGCAACACCAACATCTACAGCACAAGATGCTTTTGATGAGTTAGATGATGACATACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.273

100

0.579
  ssb Vibrio cholerae strain A1552

49.714

100

0.547
  ssb Neisseria gonorrhoeae MS11

39.655

100

0.434
  ssb Neisseria meningitidis MC58

39.655

100

0.434

Multiple sequence alignment