Detailed information NTG1145356

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: DAQ1742_RS16960
• Genome accession: NZ_LT615367
• Coordinates: 3731242..3731802 (+)
• Length: 186 a.a.
• NCBI ID: WP_035344079.1
• Uniprot ID: A0A375AEK9
• Organism: Dickeya aquatica strain 174/2
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Prophage	3731242..3744354	3731242..3731802	within	0

Gene organization within MGE regions

Location: 3731242..3744354

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DAQ1742_RS16960 (DAQ1742_03738)	ssb	3731242..3731802 (+)	561	WP_035344079.1	single-stranded DNA-binding protein	Machinery gene
DAQ1742_RS16965 (DAQ1742_03739)	-	3732417..3734297 (+)	1881	WP_035344081.1	reverse transcriptase domain-containing protein	-
DAQ1742_RS16970 (DAQ1742_03740)	-	3734444..3735022 (-)	579	WP_035344083.1	flavin reductase family protein	-
DAQ1742_RS16975 (DAQ1742_03741)	-	3735064..3735693 (-)	630	WP_035346316.1	NAD-dependent dehydratase	-
DAQ1742_RS16980	-	3735882..3736391 (-)	510	WP_035344085.1	hypothetical protein	-
DAQ1742_RS16985 (DAQ1742_03743)	-	3736721..3737293 (+)	573	WP_035344087.1	DUF4255 domain-containing protein	-
DAQ1742_RS16990 (DAQ1742_03744)	-	3737299..3738120 (+)	822	WP_035344089.1	hypothetical protein	-
DAQ1742_RS16995 (DAQ1742_03745)	-	3738215..3739768 (+)	1554	WP_035344091.1	phage tail sheath C-terminal domain-containing protein	-
DAQ1742_RS17000 (DAQ1742_03746)	-	3739819..3740289 (+)	471	WP_035344093.1	phage tail protein	-
DAQ1742_RS17005 (DAQ1742_03748)	-	3740379..3740837 (+)	459	WP_035344095.1	phage tail protein	-
DAQ1742_RS17010 (DAQ1742_03749)	-	3740894..3741076 (+)	183	WP_035344097.1	hypothetical protein	-
DAQ1742_RS17015 (DAQ1742_03750)	-	3741125..3741769 (+)	645	WP_035344099.1	hypothetical protein	-
DAQ1742_RS17020 (DAQ1742_03751)	vgrG	3741805..3743595 (+)	1791	WP_035344101.1	type VI secretion system tip protein VgrG	-
DAQ1742_RS17025 (DAQ1742_03752)	-	3743638..3743937 (+)	300	WP_035344103.1	PAAR domain-containing protein	-
DAQ1742_RS17030 (DAQ1742_03753)	-	3743938..3744354 (+)	417	WP_035344105.1	GPW/gp25 family protein	-

Sequence

Protein

• Length: 186 a.a.
• Molecular weight: 19883.97 Da
• Isoelectric Point: 5.2440

>NTDB_id=1145356 DAQ1742_RS16960 WP_035344079.1 3731242..3731802(+) (ssb) [Dickeya aquatica strain 174/2]
MASRGVNKVILIGNLGQDPEVRYMPNGGAVANLTLATSDSWRDKQTGEQKERTEWHRVALYGKLAEIAGEYLRKGSQVYI
EGQLRTRKWQDQSGQDRYTTEVVVDVSGSMQMLGGRSGGGAPAGGNMGGGNMGNAMGGNAPQGGWGQPQQPQQANQFSGG
AQSRPQQSAPMPGNEPPMDFDDDIPF

Nucleotide

• Length: 561 bp

>NTDB_id=1145356 DAQ1742_RS16960 WP_035344079.1 3731242..3731802(+) (ssb) [Dickeya aquatica strain 174/2]
ATGGCCAGCAGAGGCGTTAACAAAGTGATTCTTATCGGCAATCTGGGTCAAGACCCGGAAGTTCGCTACATGCCGAACGG
CGGCGCAGTCGCCAACCTGACTCTGGCCACGTCGGACAGCTGGCGCGATAAGCAAACCGGCGAGCAGAAAGAGCGCACCG
AGTGGCACCGCGTAGCCCTTTACGGCAAGCTGGCAGAAATCGCCGGTGAATATCTGCGTAAAGGCTCTCAGGTGTATATC
GAAGGCCAGTTGCGCACCCGCAAATGGCAGGATCAAAGTGGGCAAGACCGTTACACCACCGAAGTGGTGGTCGATGTTTC
CGGCAGCATGCAGATGCTGGGTGGCCGCAGCGGCGGCGGGGCACCTGCGGGTGGCAACATGGGCGGCGGCAATATGGGTA
ACGCGATGGGCGGTAACGCGCCACAAGGTGGTTGGGGTCAACCGCAACAGCCGCAGCAAGCCAACCAGTTCAGCGGTGGT
GCTCAGTCCCGGCCGCAGCAAAGCGCGCCGATGCCGGGCAACGAACCGCCAATGGATTTTGACGACGACATTCCGTTCTG
A

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (6-112)

3D structure

• AlphaFold DB: A0A375AEK9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Vibrio cholerae strain A1552	72.632	100	0.742
ssb	Glaesserella parasuis strain SC1401	57.609	98.925	0.57
ssb	Neisseria meningitidis MC58	44.845	100	0.468
ssb	Neisseria gonorrhoeae MS11	45.503	100	0.462