Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DXE33_RS06985 Genome accession   NZ_LT615228
Coordinates   1353130..1353585 (-) Length   151 a.a.
NCBI ID   WP_114639252.1    Uniprot ID   -
Organism   Polynucleobacter necessarius isolate PPGSP1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1348130..1358585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE33_RS06970 ilvA 1349746..1351268 (+) 1523 Protein_1434 threonine ammonia-lyase, biosynthetic -
  DXE33_RS06975 - 1351284..1352192 (+) 909 WP_114639251.1 5'-nucleotidase -
  DXE33_RS06980 queF 1352212..1353038 (+) 827 Protein_1436 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF -
  DXE33_RS06985 ssb 1353130..1353585 (-) 456 WP_114639252.1 single-stranded DNA-binding protein Machinery gene
  DXE33_RS06990 - 1353651..1354820 (-) 1170 WP_114639253.1 MFS transporter -
  DXE33_RS06995 uvrA 1354858..1357761 (+) 2904 WP_114639759.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 151 a.a.        Molecular weight: 16302.21 Da        Isoelectric Point: 5.9393

>NTDB_id=1145340 DXE33_RS06985 WP_114639252.1 1353130..1353585(-) (ssb) [Polynucleobacter necessarius isolate PPGSP1]
MASVNKVIIVGNVGRDPETRYMPSGDAVTNISVATSDRYKDKQTGEMKETTEWHRVAFFGKLAEIAGQYLKKGSQVYVEG
RLRTRKWTDASGQEKYSTEIVAETMQMLGGKPVGGSGDGVESYARSKPAEQSAPASSNAASLGAMDDDIPF

Nucleotide


Download         Length: 456 bp        

>NTDB_id=1145340 DXE33_RS06985 WP_114639252.1 1353130..1353585(-) (ssb) [Polynucleobacter necessarius isolate PPGSP1]
ATGGCTTCGGTAAATAAAGTCATCATCGTAGGTAACGTAGGACGTGATCCAGAAACGCGTTATATGCCAAGTGGTGACGC
GGTGACTAATATCTCAGTAGCAACATCTGATCGCTACAAAGACAAGCAAACTGGTGAAATGAAAGAAACAACCGAATGGC
ATCGTGTTGCATTCTTTGGCAAGCTTGCAGAAATCGCTGGCCAGTATCTTAAGAAAGGTTCACAAGTGTACGTAGAGGGT
CGTTTGCGTACTCGCAAATGGACTGATGCAAGTGGTCAAGAGAAGTACTCCACAGAAATCGTTGCAGAAACAATGCAAAT
GCTTGGTGGTAAGCCAGTAGGCGGAAGCGGTGATGGTGTCGAAAGCTATGCGCGCTCAAAGCCGGCTGAGCAGTCTGCCC
CTGCATCATCTAATGCTGCATCACTCGGTGCAATGGATGACGATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.412

100

0.603
  ssb Glaesserella parasuis strain SC1401

46.111

100

0.55
  ssb Neisseria meningitidis MC58

46.023

100

0.536
  ssb Neisseria gonorrhoeae MS11

46.023

100

0.536

Multiple sequence alignment