Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DXE27_RS02510 Genome accession   NZ_LT615227
Coordinates   495812..496267 (-) Length   151 a.a.
NCBI ID   WP_068319607.1    Uniprot ID   -
Organism   Polynucleobacter necessarius isolate PPGSP8     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 490812..501267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE27_RS02495 ilvA 492416..493936 (+) 1521 WP_128112773.1 threonine ammonia-lyase, biosynthetic -
  DXE27_RS02500 - 493951..494856 (+) 906 WP_128112774.1 5'-nucleotidase -
  DXE27_RS02505 queF 494880..495707 (+) 828 WP_128112775.1 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF -
  DXE27_RS02510 ssb 495812..496267 (-) 456 WP_068319607.1 single-stranded DNA-binding protein Machinery gene
  DXE27_RS02515 - 496352..497536 (-) 1185 WP_128112776.1 MFS transporter -
  DXE27_RS02520 uvrA 497574..500471 (+) 2898 WP_128112777.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 151 a.a.        Molecular weight: 16260.13 Da        Isoelectric Point: 5.9393

>NTDB_id=1145322 DXE27_RS02510 WP_068319607.1 495812..496267(-) (ssb) [Polynucleobacter necessarius isolate PPGSP8]
MASVNKVIIVGNVGRDPETRYMPSGDAVTNISVATSDRYKDKQTGEMKETTEWHRVAFFGKLAEIAGQYLKKGSQVYVEG
RLRTRKWTDASGQEKYSTEIVAETMQMLGGKPVGGSGDGGESYSRSKPAEQSAPAASNAASLGAMDDDIPF

Nucleotide


Download         Length: 456 bp        

>NTDB_id=1145322 DXE27_RS02510 WP_068319607.1 495812..496267(-) (ssb) [Polynucleobacter necessarius isolate PPGSP8]
ATGGCTTCGGTAAATAAGGTCATCATCGTAGGTAACGTAGGACGTGATCCAGAAACACGGTACATGCCAAGCGGCGACGC
CGTTACAAACATTTCAGTAGCAACATCTGATCGCTACAAAGACAAGCAAACTGGTGAAATGAAAGAAACCACAGAATGGC
ATCGCGTTGCATTCTTTGGCAAGCTCGCAGAAATCGCCGGTCAGTACCTCAAAAAAGGTTCACAGGTTTATGTTGAAGGT
CGTTTGCGTACACGCAAATGGACTGATGCTAGTGGCCAAGAAAAGTATTCCACTGAGATTGTTGCAGAGACAATGCAAAT
GCTTGGTGGCAAGCCAGTGGGCGGAAGTGGTGACGGTGGCGAAAGCTATAGCCGCTCAAAGCCGGCTGAGCAATCCGCTC
CAGCAGCCTCAAATGCTGCGTCATTGGGCGCAATGGACGACGATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.412

100

0.603
  ssb Glaesserella parasuis strain SC1401

46.111

100

0.55
  ssb Neisseria meningitidis MC58

46.591

100

0.543
  ssb Neisseria gonorrhoeae MS11

46.591

100

0.543

Multiple sequence alignment