Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilM   Type   Machinery gene
Locus tag   PHAGEPCYII10_RS27240 Genome accession   NZ_LT608330
Coordinates   5954880..5955944 (-) Length   354 a.a.
NCBI ID   WP_003110888.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa isolate PA14Or_reads     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 5949880..5960944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PHAGEPCYII10_RS27215 aroK 5950427..5950945 (-) 519 WP_003095833.1 shikimate kinase AroK -
  PHAGEPCYII10_RS27220 pilQ 5950957..5953089 (-) 2133 WP_003141780.1 type 4a pilus secretin PilQ Machinery gene
  PHAGEPCYII10_RS27225 pilP 5953143..5953667 (-) 525 WP_003116136.1 type 4a pilus biogenesis lipoprotein PilP -
  PHAGEPCYII10_RS27230 pilO 5953664..5954287 (-) 624 WP_003116135.1 type 4a pilus biogenesis protein PilO -
  PHAGEPCYII10_RS27235 pilN 5954284..5954880 (-) 597 WP_003141783.1 type 4a pilus biogenesis protein PilN -
  PHAGEPCYII10_RS27240 pilM 5954880..5955944 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  PHAGEPCYII10_RS27245 - 5956129..5958600 (+) 2472 WP_003141786.1 penicillin-binding protein 1A -
  PHAGEPCYII10_RS27250 - 5958696..5959964 (-) 1269 WP_003095842.1 malic enzyme -

Sequence


Protein


Download         Length: 354 a.a.        Molecular weight: 37983.48 Da        Isoelectric Point: 4.5405

>NTDB_id=1145270 PHAGEPCYII10_RS27240 WP_003110888.1 5954880..5955944(-) (pilM) [Pseudomonas aeruginosa isolate PA14Or_reads]
MLGLIKKKANTLLGIDISSTSVKLLELSRSGGRYKVEAYAVEPLPPNAVVEKNIVELEGVGQALSRVLVKAKTNLKSAVV
AVAGSAVITKTIEMEAGLSEDELENQLKIEADQYIPYPLEEVAIDFEVQGLSARNPERVDVLLAACRKENVEVREAALAL
AGLTAKVVDVEAYALERSYALLSSQLGADTDQLTVAVVDIGATMTTLSVLHNGRTIYTREQLFGGRQLTEEIQRRYGLSV
EEAGLAKKQGGLPDDYDSEVLRPFKDAVVQQVSRSLQFFFAAGQFNDVDYIVLAGGTASIQDLDRLIQQKIGTPTLVANP
FADMALNGKVNAGALASDAPALMIACGLALRSFD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=1145270 PHAGEPCYII10_RS27240 WP_003110888.1 5954880..5955944(-) (pilM) [Pseudomonas aeruginosa isolate PA14Or_reads]
GTGCTAGGGCTCATAAAGAAGAAAGCGAACACCTTGCTGGGGATCGACATCAGCTCGACCTCGGTAAAGCTCCTTGAGTT
GAGCCGCTCCGGAGGCCGCTACAAAGTGGAGGCCTATGCCGTCGAGCCGCTTCCGCCGAATGCAGTCGTGGAAAAGAACA
TCGTCGAGCTGGAAGGGGTCGGCCAGGCGTTGTCACGGGTGCTGGTCAAGGCGAAAACCAACCTGAAGTCGGCCGTGGTC
GCCGTCGCCGGTTCGGCGGTGATCACCAAGACCATCGAGATGGAGGCCGGGCTTTCCGAGGATGAACTGGAAAACCAGCT
GAAGATCGAGGCCGACCAGTACATCCCCTATCCGCTGGAGGAAGTCGCCATCGACTTCGAGGTCCAGGGACTCTCCGCGC
GCAATCCTGAGCGCGTGGACGTACTCCTGGCCGCCTGTCGGAAAGAGAACGTCGAGGTTCGCGAAGCGGCCCTGGCGCTG
GCCGGCCTGACCGCCAAGGTGGTCGACGTCGAGGCTTACGCGCTGGAGCGCTCCTATGCGCTGCTGAGCAGCCAGCTGGG
TGCCGACACCGACCAGTTGACCGTGGCGGTAGTGGACATCGGCGCGACCATGACCACCCTGAGCGTCCTGCACAACGGAC
GCACCATCTATACCCGCGAACAGCTGTTCGGCGGTCGCCAGCTCACCGAGGAGATCCAGCGGCGTTACGGACTCTCGGTG
GAGGAAGCCGGTCTCGCCAAGAAGCAGGGCGGTCTTCCGGATGACTACGACAGCGAAGTTCTGCGTCCGTTCAAGGACGC
CGTGGTGCAGCAGGTTTCCCGCTCGCTGCAGTTCTTCTTCGCCGCCGGACAGTTCAACGACGTCGACTACATCGTCCTGG
CGGGCGGTACGGCGTCTATCCAGGATCTCGATCGGTTGATCCAGCAGAAGATCGGCACCCCGACCCTGGTCGCCAACCCG
TTCGCCGACATGGCGCTGAACGGCAAGGTGAATGCCGGCGCCCTGGCCAGCGACGCTCCGGCGTTGATGATCGCCTGCGG
CCTGGCGTTGAGGAGTTTCGACTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

55.899

100

0.562

  comM Acinetobacter nosocomialis M2

55.899

100

0.562

  comM Acinetobacter baylyi ADP1

51.977

100

0.52

  pilM Legionella pneumophila strain ERS1305867

46.61

100

0.466


Multiple sequence alignment