Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DXE37_RS01080 Genome accession   NZ_LT606951
Coordinates   192710..193168 (+) Length   152 a.a.
NCBI ID   WP_114636288.1    Uniprot ID   -
Organism   Polynucleobacter necessarius isolate PPGSP6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 187710..198168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE37_RS01070 uvrA 188515..191406 (-) 2892 WP_114636286.1 excinuclease ABC subunit UvrA -
  DXE37_RS01075 - 191444..192628 (+) 1185 WP_114636287.1 MFS transporter -
  DXE37_RS01080 ssb 192710..193168 (+) 459 WP_114636288.1 single-stranded DNA-binding protein Machinery gene
  DXE37_RS01085 queF 193268..194098 (-) 831 Protein_229 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF -
  DXE37_RS01090 - 194124..195032 (-) 909 WP_114636289.1 5'-nucleotidase -
  DXE37_RS01095 ilvA 195048..196568 (-) 1521 WP_114636290.1 threonine ammonia-lyase, biosynthetic -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 16307.15 Da        Isoelectric Point: 6.4831

>NTDB_id=1145222 DXE37_RS01080 WP_114636288.1 192710..193168(+) (ssb) [Polynucleobacter necessarius isolate PPGSP6]
MASVNKVIIVGNVGRDPETRYMPSGDAVTNISVATSDRYKDKQTGEMKETTEWHRVAFFGKLAEIAGQHLKKGSQVYVEG
RLRTRKWTDASGQEKYSTEIVAETMQMLGGKPVGGSGDGGGESYSRSKPAEQSAPASSNAASLGAMDDDIPF

Nucleotide


Download         Length: 459 bp        

>NTDB_id=1145222 DXE37_RS01080 WP_114636288.1 192710..193168(+) (ssb) [Polynucleobacter necessarius isolate PPGSP6]
ATGGCTTCGGTAAATAAGGTCATCATCGTAGGTAACGTAGGACGTGATCCAGAGACGCGTTACATGCCAAGCGGCGACGC
CGTTACAAATATTTCAGTAGCAACTTCAGATCGCTACAAAGACAAACAAACTGGCGAAATGAAAGAAACCACAGAATGGC
ATCGCGTTGCGTTCTTCGGTAAGCTTGCGGAAATCGCTGGTCAGCACCTCAAAAAAGGCTCACAAGTTTATGTTGAAGGT
CGCTTGCGTACTCGCAAATGGACGGATGCTAGTGGCCAAGAAAAGTATTCCACAGAGATCGTTGCAGAAACAATGCAGAT
GCTCGGTGGCAAGCCAGTAGGCGGAAGCGGTGATGGTGGTGGCGAGAGCTATAGTCGCTCAAAGCCGGCTGAGCAGTCTG
CTCCGGCCTCATCGAATGCCGCATCACTTGGCGCAATGGATGACGATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.412

100

0.599
  ssb Glaesserella parasuis strain SC1401

45.604

100

0.546
  ssb Neisseria gonorrhoeae MS11

45.402

100

0.52
  ssb Neisseria meningitidis MC58

45.402

100

0.52

Multiple sequence alignment