Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BQ1619_RS07505 Genome accession   NZ_LT606950
Coordinates   1355501..1355956 (-) Length   151 a.a.
NCBI ID   WP_114663201.1    Uniprot ID   -
Organism   Polynucleobacter necessarius isolate PPGSP4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1350501..1360956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BQ1619_RS07490 ilvA 1352138..1353658 (+) 1521 WP_114663198.1 threonine ammonia-lyase, biosynthetic -
  BQ1619_RS07495 - 1353671..1354579 (+) 909 WP_114663199.1 5'-nucleotidase -
  BQ1619_RS07500 queF 1354600..1355425 (+) 826 Protein_1580 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF -
  BQ1619_RS07505 ssb 1355501..1355956 (-) 456 WP_114663201.1 single-stranded DNA-binding protein Machinery gene
  BQ1619_RS07510 - 1356031..1357215 (-) 1185 WP_114663202.1 MFS transporter -
  BQ1619_RS07515 uvrA 1357253..1360138 (+) 2886 WP_114663204.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 151 a.a.        Molecular weight: 16149.03 Da        Isoelectric Point: 7.0155

>NTDB_id=1145216 BQ1619_RS07505 WP_114663201.1 1355501..1355956(-) (ssb) [Polynucleobacter necessarius isolate PPGSP4]
MASVNKVIIVGNVGRDPETRYMPSGDAVTNISVATSDRYKGKQIGEMKETTEWHRIAFFGKLAEIAGQYLKKGSQVYVEG
RLRTRKWTDASGQEKYSTEIVAETMQMLGGKPAGGGGDGGESYSRSKSSEQSAPAASSAASLGAMDDDIPF

Nucleotide


Download         Length: 456 bp        

>NTDB_id=1145216 BQ1619_RS07505 WP_114663201.1 1355501..1355956(-) (ssb) [Polynucleobacter necessarius isolate PPGSP4]
ATGGCTTCGGTAAATAAGGTCATCATCGTAGGTAATGTTGGACGTGATCCAGAAACACGTTACATGCCAAGCGGCGACGC
TGTAACAAACATCTCTGTAGCAACTTCAGATCGTTACAAAGGTAAGCAAATCGGTGAAATGAAAGAAACCACAGAATGGC
ATCGCATTGCCTTCTTTGGCAAGCTTGCGGAAATTGCTGGCCAGTATCTCAAAAAAGGTTCTCAGGTTTATGTTGAAGGT
CGTTTACGCACTCGTAAATGGACAGATGCTAGTGGTCAAGAAAAATATTCCACGGAGATCGTGGCAGAAACCATGCAAAT
GCTCGGTGGCAAGCCAGCAGGTGGCGGCGGTGATGGCGGTGAAAGCTACAGTCGCTCAAAGTCCTCTGAGCAATCTGCTC
CAGCAGCCTCAAGTGCTGCATCACTTGGTGCTATGGACGACGATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.847

100

0.596
  ssb Glaesserella parasuis strain SC1401

45.556

100

0.543
  ssb Neisseria gonorrhoeae MS11

47.126

100

0.543
  ssb Neisseria meningitidis MC58

45.977

100

0.53

Multiple sequence alignment