Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DXE35_RS08075 Genome accession   NZ_LT606949
Coordinates   1500784..1501239 (-) Length   151 a.a.
NCBI ID   WP_114690167.1    Uniprot ID   -
Organism   Polynucleobacter necessarius isolate PPGSP7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1495784..1506239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE35_RS08060 ilvA 1497345..1498865 (+) 1521 WP_114690165.1 threonine ammonia-lyase, biosynthetic -
  DXE35_RS08065 - 1498893..1499801 (+) 909 WP_114690166.1 5'-nucleotidase -
  DXE35_RS08070 queF 1499832..1500660 (+) 829 Protein_1716 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF -
  DXE35_RS08075 ssb 1500784..1501239 (-) 456 WP_114690167.1 single-stranded DNA-binding protein Machinery gene
  DXE35_RS08080 - 1501321..1502505 (-) 1185 WP_114690168.1 MFS transporter -
  DXE35_RS08085 uvrA 1502543..1505440 (+) 2898 WP_114690169.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 151 a.a.        Molecular weight: 16244.13 Da        Isoelectric Point: 5.9393

>NTDB_id=1145205 DXE35_RS08075 WP_114690167.1 1500784..1501239(-) (ssb) [Polynucleobacter necessarius isolate PPGSP7]
MASVNKVIIVGNVGRDPETRYMPSGDAVTNISVATSDRYKDKQTGEMKETTEWHRVAFFGKLAEIAGQYLKKGSQVYVEG
RLRTRKWTDASGQEKYSTEIVAETMQMLGGKPVGGSGDGGESYARAKPAEQSAPASSNAASLGAMDDDIPF

Nucleotide


Download         Length: 456 bp        

>NTDB_id=1145205 DXE35_RS08075 WP_114690167.1 1500784..1501239(-) (ssb) [Polynucleobacter necessarius isolate PPGSP7]
ATGGCTTCGGTAAATAAGGTCATCATCGTAGGTAACGTAGGACGTGATCCAGAAACACGTTATATGCCAAGCGGCGACGC
CGTTACAAATATTTCAGTAGCAACATCCGATCGCTACAAAGACAAACAAACTGGTGAAATGAAAGAAACCACAGAATGGC
ATCGCGTTGCATTCTTTGGCAAGCTTGCAGAAATCGCTGGTCAGTACCTCAAAAAAGGTTCACAGGTTTATGTTGAAGGT
CGTTTACGTACACGTAAATGGACTGATGCTAGTGGCCAGGAAAAGTATTCCACAGAGATCGTTGCGGAAACAATGCAAAT
GCTCGGTGGTAAGCCAGTAGGCGGAAGCGGTGATGGTGGCGAAAGCTATGCACGCGCAAAGCCGGCTGAGCAGTCTGCTC
CAGCATCATCTAACGCTGCCTCACTAGGCGCTATGGATGACGATATTCCTTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.107

100

0.623
  ssb Glaesserella parasuis strain SC1401

46.111

100

0.55
  ssb Neisseria meningitidis MC58

46.023

100

0.536
  ssb Neisseria gonorrhoeae MS11

46.023

100

0.536

Multiple sequence alignment