Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DXE44_RS08410 Genome accession   NZ_LT606946
Coordinates   1624078..1624533 (-) Length   151 a.a.
NCBI ID   WP_114654037.1    Uniprot ID   -
Organism   Polynucleobacter necessarius isolate PPGSP5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1619078..1629533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE44_RS08385 ilvA 1619446..1620966 (+) 1521 WP_114654032.1 threonine ammonia-lyase, biosynthetic -
  DXE44_RS08390 - 1620981..1621889 (+) 909 WP_114654033.1 5'-nucleotidase -
  DXE44_RS08395 queF 1621889..1622716 (+) 828 WP_114654034.1 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF -
  DXE44_RS08400 - 1622717..1622950 (-) 234 WP_114654035.1 hypothetical protein -
  DXE44_RS08405 - 1623011..1623952 (-) 942 WP_114654036.1 hypothetical protein -
  DXE44_RS08410 ssb 1624078..1624533 (-) 456 WP_114654037.1 single-stranded DNA-binding protein Machinery gene
  DXE44_RS08415 - 1624616..1625800 (-) 1185 WP_114654038.1 MFS transporter -
  DXE44_RS08420 uvrA 1625838..1628730 (+) 2893 Protein_1713 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 151 a.a.        Molecular weight: 16231.13 Da        Isoelectric Point: 8.3350

>NTDB_id=1145193 DXE44_RS08410 WP_114654037.1 1624078..1624533(-) (ssb) [Polynucleobacter necessarius isolate PPGSP5]
MASVNKVIIVGNVGRDPETRYMPSGDAVTNISVATSDRYKDKQSGEMKETTEWHRVAFFGKLAEIAGQYLKKGSQVYVEG
RLRTRKWTDASGQEKYSTEIVAETMQMLGGKPVGGGGDGGESYSRSKPAKQSAPASSNAASLGAMDDDIPF

Nucleotide


Download         Length: 456 bp        

>NTDB_id=1145193 DXE44_RS08410 WP_114654037.1 1624078..1624533(-) (ssb) [Polynucleobacter necessarius isolate PPGSP5]
ATGGCTTCGGTAAATAAGGTCATCATCGTAGGTAACGTAGGGCGCGACCCAGAAACACGTTATATGCCAAGCGGCGACGC
AGTAACCAACATTTCAGTAGCGACATCAGATCGTTACAAAGATAAGCAGTCTGGCGAAATGAAAGAAACCACAGAATGGC
ACCGCGTTGCATTCTTTGGAAAACTTGCAGAGATCGCTGGTCAATACCTCAAAAAAGGTTCACAGGTTTATGTAGAAGGT
CGTTTGCGAACACGTAAATGGACTGACGCTAGTGGCCAGGAAAAATATTCCACTGAGATCGTTGCAGAAACAATGCAAAT
GCTTGGCGGTAAGCCAGTAGGTGGCGGTGGTGACGGTGGCGAAAGCTATAGCCGCTCAAAGCCGGCTAAGCAGTCTGCAC
CAGCATCTTCAAATGCTGCATCCCTTGGTGCAATGGATGACGATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.412

100

0.603
  ssb Neisseria gonorrhoeae MS11

47.159

100

0.55
  ssb Glaesserella parasuis strain SC1401

45.556

100

0.543
  ssb Neisseria meningitidis MC58

46.023

100

0.536

Multiple sequence alignment