Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | LLA12_RS12080 | Genome accession | NZ_LT599049 |
| Coordinates | 2465178..2465678 (-) | Length | 166 a.a. |
| NCBI ID | WP_003131953.1 | Uniprot ID | - |
| Organism | Lactococcus lactis subsp. lactis strain A12 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2460178..2470678
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LLA12_RS12055 (LLA12_02555) | gnd | 2461248..2462153 (-) | 906 | WP_032946987.1 | phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) | - |
| LLA12_RS12060 (LLA12_02556) | - | 2462518..2463366 (+) | 849 | WP_021723114.1 | MurR/RpiR family transcriptional regulator | - |
| LLA12_RS12065 (LLA12_02557) | - | 2463404..2463712 (+) | 309 | WP_017865196.1 | DUF960 domain-containing protein | - |
| LLA12_RS12070 (LLA12_02558) | - | 2463786..2464559 (-) | 774 | WP_003131951.1 | metallophosphoesterase | - |
| LLA12_RS12075 (LLA12_02559) | rpsR | 2464759..2465004 (-) | 246 | WP_003131952.1 | 30S ribosomal protein S18 | - |
| LLA12_RS12080 (LLA12_02560) | ssb | 2465178..2465678 (-) | 501 | WP_003131953.1 | single-stranded DNA-binding protein | Machinery gene |
| LLA12_RS12085 (LLA12_02561) | rpsF | 2465708..2466001 (-) | 294 | WP_003131954.1 | 30S ribosomal protein S6 | - |
| LLA12_RS12090 (LLA12_02562) | - | 2466193..2467047 (-) | 855 | WP_021723264.1 | undecaprenyl-diphosphate phosphatase | - |
| LLA12_RS12095 (LLA12_02563) | - | 2467569..2469035 (+) | 1467 | WP_017865200.1 | amino acid permease | - |
Sequence
Protein
Download Length: 166 a.a. Molecular weight: 18304.13 Da Isoelectric Point: 5.2279
>NTDB_id=1144897 LLA12_RS12080 WP_003131953.1 2465178..2465678(-) (ssb) [Lactococcus lactis subsp. lactis strain A12]
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSAREGMGGGTSAGSYSAPSQSTNNTPRPQTNNNNATPNFGRDADPFGSSPMEIS
DDDLPF
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSAREGMGGGTSAGSYSAPSQSTNNTPRPQTNNNNATPNFGRDADPFGSSPMEIS
DDDLPF
Nucleotide
Download Length: 501 bp
>NTDB_id=1144897 LLA12_RS12080 WP_003131953.1 2465178..2465678(-) (ssb) [Lactococcus lactis subsp. lactis strain A12]
ATGATTAACAATGTTGTATTAGTAGGACGCATTACTCGCGATCCTGAACTTCGATACACCCCTCAAAATCAAGCTGTCGC
AACATTTTCATTGGCTGTAAACCGTCAATTTAAAAATGCGAATGGCGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAGAATTTGGCGAATTGGGCTAAAAAAGGAGCTTTGATTGGGGTAACTGGTCGAATTCAAACACGT
AACTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGACAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGTGAAGGTATGGGAGGCGGAACTTCTGCTGGTTCATATTCTGCACCTAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAACAATAATGCAACACCGAATTTCGGTCGTGATGCTGATCCGTTTGGTAGCTCACCGATGGAAATTTCG
GATGATGACCTTCCATTCTAA
ATGATTAACAATGTTGTATTAGTAGGACGCATTACTCGCGATCCTGAACTTCGATACACCCCTCAAAATCAAGCTGTCGC
AACATTTTCATTGGCTGTAAACCGTCAATTTAAAAATGCGAATGGCGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAGAATTTGGCGAATTGGGCTAAAAAAGGAGCTTTGATTGGGGTAACTGGTCGAATTCAAACACGT
AACTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGACAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGTGAAGGTATGGGAGGCGGAACTTCTGCTGGTTCATATTCTGCACCTAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAACAATAATGCAACACCGAATTTCGGTCGTGATGCTGATCCGTTTGGTAGCTCACCGATGGAAATTTCG
GATGATGACCTTCCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
60.465 |
100 |
0.627 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
57.803 |
100 |
0.602 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.855 |
0.373 |
| ssb | Glaesserella parasuis strain SC1401 |
35.028 |
100 |
0.373 |