Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   LLA12_RS09055 Genome accession   NZ_LT599049
Coordinates   1894976..1895965 (-) Length   329 a.a.
NCBI ID   WP_021722161.1    Uniprot ID   S6EXB1
Organism   Lactococcus lactis subsp. lactis strain A12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1889976..1900965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLA12_RS09040 (LLA12_01929) - 1891342..1892268 (-) 927 WP_010906107.1 peptidyl-prolyl cis-trans isomerase -
  LLA12_RS09045 (LLA12_01930) - 1892422..1893105 (-) 684 WP_021722159.1 O-methyltransferase -
  LLA12_RS09050 (LLA12_01931) pepF 1893108..1894913 (-) 1806 WP_021722160.1 oligoendopeptidase F Regulator
  LLA12_RS09055 (LLA12_01932) coiA 1894976..1895965 (-) 990 WP_021722161.1 competence protein CoiA Machinery gene
  LLA12_RS09060 (LLA12_01933) - 1896039..1897124 (-) 1086 WP_068872831.1 YdcF family protein -
  LLA12_RS09065 (LLA12_01934) - 1897286..1898134 (-) 849 WP_021722162.1 alpha/beta hydrolase -
  LLA12_RS09070 (LLA12_01935) - 1898326..1899747 (-) 1422 WP_012898314.1 NCS2 family permease -
  LLA12_RS09075 (LLA12_01936) - 1900054..1900890 (+) 837 WP_003130402.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 329 a.a.        Molecular weight: 39378.91 Da        Isoelectric Point: 8.7297

>NTDB_id=1144874 LLA12_RS09055 WP_021722161.1 1894976..1895965(-) (coiA) [Lactococcus lactis subsp. lactis strain A12]
MLTAIDENGQVVNLLEIEVKELTGKYFCPSCKSELFIKNGEIKMPHFAHKSLKACDLWLENESEQHLGLKKALYQWFKKT
DKVEIEAYLPEFKQRPDLLVNDKIAIEIQCSHLSTKRLKERTENYQVHGFTVLWLMGQDLWLKDQITELQKNLVYFSENR
GFYYWELDFKAQKMRLKSLIHEDLRGKIIYLQEEIPFGEGRLIEQLRLPFLSQKLLTIPLIVDLKLAEFIRRQLYYCSPK
WLKLQEKYYQRGENLLNLTFERSFIAPLGLNLLEVFDDKIPLHKFTQIKQNINPYYENFLINFQQNSFKAVYPPRFYAIM
KKQKKDMNE

Nucleotide


Download         Length: 990 bp        

>NTDB_id=1144874 LLA12_RS09055 WP_021722161.1 1894976..1895965(-) (coiA) [Lactococcus lactis subsp. lactis strain A12]
ATGTTGACAGCAATTGATGAAAATGGACAAGTAGTAAACTTATTAGAAATAGAAGTAAAAGAACTGACAGGAAAATATTT
TTGTCCTTCTTGTAAATCAGAGTTATTTATAAAAAATGGTGAAATAAAGATGCCTCACTTTGCTCATAAATCTCTCAAAG
CTTGCGACTTATGGCTTGAAAACGAATCTGAACAACATTTAGGATTAAAAAAAGCACTCTATCAATGGTTTAAAAAAACT
GATAAGGTGGAAATTGAAGCTTATCTTCCTGAATTTAAGCAGAGGCCAGATTTATTGGTAAATGATAAAATAGCTATTGA
AATTCAATGTTCTCATCTTTCTACGAAACGTTTAAAAGAAAGGACAGAAAATTATCAAGTCCACGGTTTTACGGTACTTT
GGCTTATGGGGCAAGATTTATGGTTAAAAGACCAAATAACAGAACTTCAAAAAAATCTAGTCTATTTTTCAGAAAATAGA
GGTTTCTATTATTGGGAGTTAGATTTCAAAGCTCAGAAGATGAGATTAAAATCCCTGATTCATGAAGATTTGCGTGGAAA
AATTATTTATTTACAAGAAGAAATTCCTTTTGGGGAAGGACGACTTATTGAGCAATTACGACTGCCTTTTTTATCACAAA
AGTTACTGACAATACCACTTATTGTTGATCTTAAACTAGCAGAATTTATTCGTCGGCAACTTTATTATTGTTCACCAAAA
TGGTTGAAACTTCAGGAAAAATATTACCAAAGAGGTGAAAATTTGTTGAATTTGACTTTTGAACGTTCATTTATTGCTCC
TTTGGGATTGAACTTACTTGAAGTTTTTGATGATAAAATCCCTTTACATAAATTTACTCAAATTAAGCAGAATATTAATC
CTTATTATGAAAACTTTTTAATAAATTTTCAGCAAAATAGCTTTAAGGCAGTCTATCCTCCCCGTTTCTATGCTATAATG
AAAAAGCAGAAGAAGGATATGAATGAATGA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S6EXB1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Lactococcus lactis subsp. cremoris KW2

75.153

99.088

0.745
  coiA Streptococcus mitis NCTC 12261

44.099

97.872

0.432
  coiA Streptococcus pneumoniae TIGR4

43.789

97.872

0.429
  coiA Streptococcus pneumoniae Rx1

43.789

97.872

0.429
  coiA Streptococcus pneumoniae D39

43.789

97.872

0.429
  coiA Streptococcus pneumoniae R6

43.789

97.872

0.429

Multiple sequence alignment