Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NCTC9997_RS14620 Genome accession   NZ_LT575468
Coordinates   3289520..3290080 (-) Length   186 a.a.
NCBI ID   WP_039046679.1    Uniprot ID   A0A1A9B0G7
Organism   Plesiomonas shigelloides strain NCTC10360     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3284520..3295080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NCTC9997_RS14620 (BAY29_RS14490) ssb 3289520..3290080 (-) 561 WP_039046679.1 single-stranded DNA-binding protein Machinery gene
  NCTC9997_RS14625 (BAY29_RS14495) uvrA 3290340..3293195 (+) 2856 WP_064978338.1 excinuclease ABC subunit UvrA -
  NCTC9997_RS14630 (BAY29_RS14500) - 3293295..3294425 (-) 1131 WP_152135851.1 pyridoxal-phosphate-dependent aminotransferase family protein -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 20319.38 Da        Isoelectric Point: 5.0019

>NTDB_id=1143897 NCTC9997_RS14620 WP_039046679.1 3289520..3290080(-) (ssb) [Plesiomonas shigelloides strain NCTC10360]
MARGGINKVILIGNLGQDPEVRYMPNGNAVANISIATSESWRDKNTGEQKEMTEWHRVVLYRRLAEVAGEYLKKGAKVYI
EGKLRTRKWQDQNGQERYSTEIQADEMQMLDSRGGMGAPAGQSQGGWGQPQQPQNQGFAPQQSQGNYGNAPAQGGYANNT
PNAAPANNAGFGSAEPPMDFDDDIPF

Nucleotide


Download         Length: 561 bp        

>NTDB_id=1143897 NCTC9997_RS14620 WP_039046679.1 3289520..3290080(-) (ssb) [Plesiomonas shigelloides strain NCTC10360]
ATGGCCAGAGGTGGCATTAACAAAGTTATCCTGATCGGTAATTTGGGGCAGGACCCTGAAGTACGCTACATGCCGAACGG
TAATGCTGTCGCTAATATCAGCATCGCGACCTCTGAAAGCTGGCGCGACAAGAATACCGGCGAGCAAAAAGAGATGACCG
AATGGCACCGTGTTGTGCTGTACCGTCGTCTGGCAGAAGTGGCGGGTGAATACCTGAAGAAAGGCGCCAAGGTTTACATT
GAAGGTAAACTGCGTACTCGTAAATGGCAGGATCAGAACGGCCAAGAGCGTTACAGCACCGAAATCCAAGCCGATGAGAT
GCAAATGCTGGATTCCCGTGGCGGCATGGGCGCACCGGCGGGCCAATCACAAGGCGGTTGGGGTCAACCACAGCAGCCAC
AAAACCAAGGGTTTGCTCCACAGCAGTCCCAAGGTAACTACGGCAATGCACCAGCGCAAGGCGGTTACGCCAACAATACC
CCGAATGCGGCACCAGCGAATAACGCCGGTTTCGGTAGCGCTGAGCCACCAATGGATTTTGATGACGACATTCCATTCTG
A

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1A9B0G7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

61.307

100

0.656
  ssb Glaesserella parasuis strain SC1401

57.979

100

0.586
  ssb Neisseria meningitidis MC58

48.634

98.387

0.478
  ssb Neisseria gonorrhoeae MS11

48.634

98.387

0.478

Multiple sequence alignment