Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   A8Q77_RS01715 Genome accession   NZ_LT571436
Coordinates   380391..380924 (+) Length   177 a.a.
NCBI ID   WP_004283644.1    Uniprot ID   -
Organism   Neisseria weaveri strain NCTC13585     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 375391..385924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A8Q77_RS01695 (SAMEA3174300_00335) nhaA 375693..376838 (+) 1146 WP_064130303.1 Na+/H+ antiporter NhaA -
  A8Q77_RS01700 (SAMEA3174300_00336) pyrC 376970..378007 (+) 1038 WP_064130304.1 dihydroorotase -
  A8Q77_RS01705 (SAMEA3174300_00337) - 378131..378763 (+) 633 WP_064130305.1 lytic transglycosylase domain-containing protein -
  A8Q77_RS01710 (SAMEA3174300_00338) - 379006..380391 (+) 1386 WP_040669737.1 MFS transporter -
  A8Q77_RS01715 (SAMEA3174300_00339) ssb 380391..380924 (+) 534 WP_004283644.1 single-stranded DNA-binding protein Machinery gene
  A8Q77_RS01730 (SAMEA3174300_00342) yaaA 381631..382410 (-) 780 WP_036494765.1 peroxide stress protein YaaA -
  A8Q77_RS01735 (SAMEA3174300_00343) - 382635..385079 (-) 2445 WP_064130306.1 TonB-dependent receptor -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19432.58 Da        Isoelectric Point: 5.2955

>NTDB_id=1143786 A8Q77_RS01715 WP_004283644.1 380391..380924(+) (ssb) [Neisseria weaveri strain NCTC13585]
MSSLNKVILIGNLGRDPEIRYMPNGEAVCNFSIATSEVWNDRNSGQRQERTEWHNITLYRRLAEVAGQYLRKGSSVYIEG
RIQSRKYTGKDGIERMAFDIIGSEMKMLGSRSGGSSAEYGDGGYQPSAPQGNYMPQESSSAAYQSPAAPQQPPAAPRRQT
PVAPAAPVDDIDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=1143786 A8Q77_RS01715 WP_004283644.1 380391..380924(+) (ssb) [Neisseria weaveri strain NCTC13585]
ATGTCATCATTAAATAAAGTGATTCTTATCGGCAATCTAGGGCGCGACCCGGAAATACGCTATATGCCCAACGGTGAGGC
CGTCTGCAATTTCAGTATTGCAACCAGCGAAGTTTGGAACGACCGTAACAGCGGACAACGCCAAGAACGCACCGAATGGC
ACAACATCACACTTTACCGCCGCTTGGCCGAAGTTGCCGGCCAATATTTGCGTAAAGGCAGCTCGGTATATATCGAAGGC
CGTATCCAAAGCCGCAAATATACAGGCAAAGACGGCATCGAGCGCATGGCGTTCGATATTATCGGCAGTGAAATGAAAAT
GCTGGGTTCACGCAGCGGAGGTTCGTCTGCCGAATACGGAGACGGTGGTTACCAGCCGTCAGCACCGCAAGGCAACTATA
TGCCACAGGAATCTTCATCTGCCGCTTATCAATCACCAGCCGCACCGCAACAGCCTCCGGCTGCTCCACGCCGCCAAACA
CCTGTTGCACCGGCTGCTCCGGTGGACGATATTGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

69.143

98.87

0.684
  ssb Neisseria meningitidis MC58

68.571

98.87

0.678
  ssb Vibrio cholerae strain A1552

47.802

100

0.492
  ssb Glaesserella parasuis strain SC1401

46.196

100

0.48

Multiple sequence alignment