Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   BJR96_RS08855 Genome accession   NZ_LT545678
Coordinates   1756054..1756743 (-) Length   229 a.a.
NCBI ID   WP_069986623.1    Uniprot ID   -
Organism   Streptococcus agalactiae isolate SA111     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1751054..1761743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJR96_RS08835 (SA111_01778) dnaI 1751857..1752759 (-) 903 WP_000843626.1 primosomal protein DnaI -
  BJR96_RS08840 (SA111_01779) - 1752756..1753931 (-) 1176 WP_000074512.1 DnaD domain protein -
  BJR96_RS08845 (SA111_01780) nrdR 1753931..1754410 (-) 480 WP_001203682.1 transcriptional regulator NrdR -
  BJR96_RS08850 (SA111_01781) - 1754559..1756064 (-) 1506 WP_070001253.1 HAMP domain-containing histidine kinase -
  BJR96_RS08855 (SA111_01782) covR 1756054..1756743 (-) 690 WP_069986623.1 response regulator transcription factor Regulator
  BJR96_RS08860 (SA111_01783) - 1756978..1757511 (-) 534 WP_000927544.1 YceD family protein -
  BJR96_RS08865 (SA111_01784) htpX 1757616..1758506 (-) 891 WP_069986257.1 zinc metalloprotease HtpX -
  BJR96_RS08870 (SA111_01785) - 1758527..1759081 (-) 555 WP_000537054.1 LemA family protein -
  BJR96_RS08875 (SA111_01786) rsmG 1759209..1759922 (+) 714 WP_000188798.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  BJR96_RS08880 (SA111_01787) - 1759937..1761316 (+) 1380 WP_000680110.1 TrkH family potassium uptake protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26573.59 Da        Isoelectric Point: 4.7329

>NTDB_id=1143710 BJR96_RS08855 WP_069986623.1 1756054..1756743(-) (covR) [Streptococcus agalactiae isolate SA111]
MGKKILIIEDEKNLARFVSLELLHEGYDVVVETNGREGLDTALEKDFDLILLDLMLPEMDGFEITRRLQAEKTTYIMMMT
ARDSVMDIVAGLDRGADDYIVKPFAIEELLARVRAIFRRQEIETKTKEKGDSGSFRDLSLNTYNRSAMRGDEEISLTKRE
FDLLNVLMTNMNRVMTREELLEHVWKYDVAAETNVVDVYIRYLRGKIDIPGRESYIQTVRGMGYVIREK

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1143710 BJR96_RS08855 WP_069986623.1 1756054..1756743(-) (covR) [Streptococcus agalactiae isolate SA111]
ATGGGTAAAAAGATCTTAATAATCGAAGATGAGAAAAATTTAGCTCGCTTCGTCTCGTTAGAACTACTACATGAAGGATA
TGATGTTGTTGTTGAAACAAACGGTCGTGAAGGATTGGACACAGCATTAGAAAAAGATTTTGATTTGATTCTACTGGATT
TAATGCTTCCAGAGATGGATGGTTTCGAAATCACACGTCGCCTGCAGGCTGAAAAAACAACCTATATCATGATGATGACA
GCACGTGATTCTGTTATGGATATTGTAGCTGGTCTTGATCGTGGAGCAGATGATTATATTGTTAAGCCGTTTGCAATCGA
AGAATTATTAGCACGTGTTAGAGCGATTTTCCGACGCCAAGAAATTGAAACGAAGACAAAAGAAAAAGGTGATAGCGGTA
GTTTCCGTGATTTATCATTAAATACTTATAATCGTTCAGCGATGCGTGGTGATGAGGAAATTTCACTAACAAAACGTGAA
TTTGATTTATTGAATGTCTTGATGACAAATATGAATCGTGTTATGACACGAGAAGAGTTGTTAGAACATGTTTGGAAATA
CGATGTGGCAGCAGAGACAAACGTTGTTGATGTTTATATCCGTTACCTAAGAGGTAAAATTGATATCCCAGGTCGTGAAT
CATATATTCAAACTGTTCGCGGAATGGGCTATGTGATTCGTGAAAAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-114)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(152-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

79.476

100

0.795
  covR Lactococcus lactis subsp. lactis strain DGCC12653

66.228

99.563

0.659
  vicR Streptococcus mutans UA159

45.887

100

0.463
  micA Streptococcus pneumoniae Cp1015

43.478

100

0.437

Multiple sequence alignment