Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdK   Type   Machinery gene
Locus tag   MAB1_RS01345 Genome accession   NZ_LT158599
Coordinates   275025..276062 (+) Length   345 a.a.
NCBI ID   WP_062261362.1    Uniprot ID   A0A0X3BI28
Organism   Methanoculleus bourgensis isolate Methanoculleus sp MAB1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 270025..281062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MAB1_RS01330 (MMAB1_0329) - 271051..271689 (+) 639 WP_048104419.1 hypothetical protein -
  MAB1_RS01335 (MMAB1_0330) epdL 271676..274102 (+) 2427 WP_062261359.1 type II/IV secretion system ATPase subunit Machinery gene
  MAB1_RS01340 (MMAB1_0331) epdJ 274099..275022 (+) 924 WP_014866163.1 type II secretion system F family protein Machinery gene
  MAB1_RS01345 (MMAB1_0332) epdK 275025..276062 (+) 1038 WP_062261362.1 type II secretion system F family protein Machinery gene
  MAB1_RS01350 (MMAB1_0334) - 277291..277809 (-) 519 WP_062261365.1 acylphosphatase -
  MAB1_RS01355 (MMAB1_0336) - 278025..279488 (-) 1464 WP_062261368.1 cobyric acid synthase -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 38116.27 Da        Isoelectric Point: 5.0545

>NTDB_id=1143601 MAB1_RS01345 WP_062261362.1 275025..276062(+) (epdK) [Methanoculleus bourgensis isolate Methanoculleus sp MAB1]
MGFKEIIDDFLNRSPDRGERVDAPAADAFEEQEQEIFGKIENQRKYREGFHRFIRHPLRVMMEDPVTVLFISVPAALLLL
IGGSMSLVMSYGFGVLFTTTMIDDIFVFSLLIAIVPLAILDLKEALRVSSIEASLPNFFRDVAGMNDSGMTLPHAIHIVS
EGEYGALTPHVRQLDTEMSWGVPFVEAIRRFGKTVNTPLAERSVDLIAHASSAGGDVSEVLRAAAHDAYEFFNLKSERRN
GMMIYMIIIVMSFFVFLFVIGVLSSTFLSTMAEAGEAVAASGSSQTFMGTVDLFLYNRLFSHSALIQGFFSGLAAGIMGE
GRVLAGLKYSAIMVLIAWVAFRFFI

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=1143601 MAB1_RS01345 WP_062261362.1 275025..276062(+) (epdK) [Methanoculleus bourgensis isolate Methanoculleus sp MAB1]
ATGGGATTTAAAGAGATTATCGATGATTTCCTGAATAGATCGCCTGACCGTGGCGAGAGGGTGGATGCCCCGGCGGCTGA
TGCCTTCGAGGAGCAGGAGCAGGAGATCTTTGGCAAGATTGAGAACCAGCGGAAGTACCGGGAAGGGTTTCACCGGTTCA
TCAGGCACCCGCTCCGGGTGATGATGGAAGACCCGGTCACTGTCCTTTTCATATCGGTCCCGGCGGCGCTGCTCCTCCTC
ATCGGGGGGTCTATGAGCCTGGTGATGTCCTATGGTTTCGGCGTCCTCTTCACGACGACGATGATCGATGACATCTTTGT
CTTCTCGCTCCTCATCGCTATCGTGCCGCTCGCGATCCTCGACCTCAAGGAGGCGCTCCGCGTCTCGAGCATCGAGGCCT
CCCTCCCGAACTTCTTCCGGGACGTGGCCGGGATGAACGACTCCGGCATGACGCTCCCGCACGCGATCCATATCGTCTCG
GAGGGCGAGTACGGGGCGCTCACGCCGCACGTCCGCCAGCTGGATACCGAGATGTCCTGGGGCGTCCCGTTCGTGGAGGC
TATCCGCCGGTTTGGGAAGACAGTGAACACCCCGCTTGCCGAGCGGAGCGTCGACCTGATTGCGCACGCGAGTTCTGCCG
GCGGTGACGTCAGCGAGGTGCTTCGGGCGGCGGCTCACGACGCCTATGAGTTCTTCAACCTGAAGTCGGAGCGGAGGAAC
GGTATGATGATCTACATGATCATCATCGTTATGTCGTTCTTTGTCTTCCTCTTCGTCATCGGGGTGCTCTCAAGCACCTT
CCTCTCCACCATGGCAGAGGCGGGCGAGGCGGTCGCGGCGTCGGGTTCGAGCCAGACGTTCATGGGTACCGTGGACCTCT
TCCTCTACAACCGGCTCTTCTCCCACTCCGCACTGATCCAGGGGTTCTTCTCGGGGCTTGCTGCGGGCATCATGGGCGAA
GGCCGGGTGCTCGCGGGGCTGAAGTACTCCGCCATCATGGTGCTGATCGCCTGGGTTGCGTTCCGGTTCTTTATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(138-263)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0X3BI28

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdK Methanoculleus thermophilus strain DSM 2373

86

100

0.872

Multiple sequence alignment