Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdL   Type   Machinery gene
Locus tag   MAB1_RS01335 Genome accession   NZ_LT158599
Coordinates   271676..274102 (+) Length   808 a.a.
NCBI ID   WP_062261359.1    Uniprot ID   A0A0X3BHB0
Organism   Methanoculleus bourgensis isolate Methanoculleus sp MAB1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 266676..279102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MAB1_RS01315 (MMAB1_0326) - 267625..269508 (-) 1884 WP_062261356.1 PINc/VapC family ATPase -
  MAB1_RS01320 (MMAB1_0327) hisI 269532..269897 (-) 366 WP_014866159.1 phosphoribosyl-AMP cyclohydrolase -
  MAB1_RS01325 (MMAB1_0328) - 269904..270707 (-) 804 WP_014866161.1 A24 family peptidase C-terminal domain-containing protein -
  MAB1_RS01330 (MMAB1_0329) - 271051..271689 (+) 639 WP_048104419.1 hypothetical protein -
  MAB1_RS01335 (MMAB1_0330) epdL 271676..274102 (+) 2427 WP_062261359.1 type II/IV secretion system ATPase subunit Machinery gene
  MAB1_RS01340 (MMAB1_0331) epdJ 274099..275022 (+) 924 WP_014866163.1 type II secretion system F family protein Machinery gene
  MAB1_RS01345 (MMAB1_0332) epdK 275025..276062 (+) 1038 WP_062261362.1 type II secretion system F family protein Machinery gene
  MAB1_RS01350 (MMAB1_0334) - 277291..277809 (-) 519 WP_062261365.1 acylphosphatase -

Sequence

Protein


Download         Length: 808 a.a.        Molecular weight: 89681.53 Da        Isoelectric Point: 4.4373

>NTDB_id=1143599 MAB1_RS01335 WP_062261359.1 271676..274102(+) (epdL) [Methanoculleus bourgensis isolate Methanoculleus sp MAB1]
MRAGEDEERELIATVRNLLTQSRKPGSSGEEVASSPPGDQPGEEEVREEAVLEDGGQPDPSPAPAPRGAGIRSLIDSVLG
SGGAGQRRASGNGDPARALLERIGESGAESGGEDATSPEAVEDMETEPEMPASPPERRDPFGIFAGRKKEADTSAPNDSG
AATADEPVIPARGHRASPGLPDPEVEEEPETDENISAGVVSVDELGNLADLILPKGATFEVEELHIKRNERQFDFVDNAR
VVSEFDELFTEAFSSATLAAAAAATEVPVEDVPEPRFGFLERFHLPKTVEVIEEYNPVLHGPLVDLSMRPSPGLEEIELY
PVNEPYAYVRVTYDSTTHEYTYNVLEPVLTPGEQELFGEIKERLFETLDITTRDLTRDEARKALRDAANTIIADYGIRLE
PPGREKILYHVEKEFLGDGLIDPVMHDGYIEDISCDGVGSAIFVYHTTYESMKTSLIYRDAAELDSFVTKLAQRAGKYIS
IAEPMLDATMSDGSRIQMTLGSEVTAHGSTFTIRKFREEPITPTDLIEWHTFSPLGIAFLWLAVENAKSCIFAGGTASGK
TTTLNAISLFIPPLAKIVTLEDTRELKLPHPNWIPSITRDSFSQDGRGEIDMYELLRAALRQRPEYILVGEVRGREALTL
FQAMSTGHVTYATMHADSVASAVHRLENPPINVPRNMLSALSLMSIQVQARVGGQRIRRNKQLIEILDIDPRTNELITNE
VFRWHPATDEIRYSGKSYILEQIMEDRGWSEERMQEELKRRQEVLEWMRIKKIRYFRDVSKILVSYFRDPETVIQRVRSD
LYGEGGSA

Nucleotide


Download         Length: 2427 bp        

>NTDB_id=1143599 MAB1_RS01335 WP_062261359.1 271676..274102(+) (epdL) [Methanoculleus bourgensis isolate Methanoculleus sp MAB1]
ATGAGAGCAGGTGAAGATGAAGAACGTGAATTGATAGCAACGGTCAGGAATCTTCTCACACAATCCAGGAAACCGGGGAG
CAGCGGCGAGGAGGTCGCATCCTCCCCGCCCGGGGACCAGCCTGGTGAGGAAGAGGTCCGGGAAGAAGCGGTTCTGGAGG
ACGGGGGGCAACCAGACCCCTCGCCCGCACCGGCACCGAGGGGAGCGGGTATCCGTTCGCTCATCGACTCGGTGCTCGGG
TCGGGGGGCGCCGGCCAGCGGCGCGCATCAGGCAATGGTGATCCCGCCAGGGCGCTCCTCGAGCGGATTGGAGAGAGTGG
TGCAGAATCGGGCGGGGAGGATGCGACCTCCCCAGAGGCGGTGGAGGATATGGAGACAGAGCCGGAGATGCCGGCCTCTC
CGCCGGAGCGCCGTGACCCCTTCGGCATCTTTGCGGGGCGGAAGAAGGAGGCGGACACTTCCGCCCCAAATGACTCCGGG
GCGGCGACGGCTGACGAGCCGGTGATCCCGGCACGCGGTCACCGCGCCTCTCCCGGTCTCCCCGACCCGGAGGTGGAAGA
AGAGCCCGAAACCGACGAGAACATTTCTGCCGGTGTGGTGTCGGTCGACGAACTCGGGAACCTGGCCGACCTGATCCTCC
CGAAGGGTGCGACATTTGAGGTCGAGGAGCTGCACATTAAACGGAACGAGCGCCAGTTCGACTTTGTCGATAACGCCCGG
GTTGTATCTGAGTTTGATGAACTCTTCACCGAGGCGTTTTCTTCTGCCACGCTTGCCGCGGCCGCGGCGGCCACGGAGGT
CCCGGTTGAGGACGTCCCGGAGCCCAGGTTCGGGTTCCTCGAGCGGTTCCACCTCCCGAAGACTGTGGAGGTGATCGAGG
AGTACAACCCTGTCCTCCACGGGCCGCTCGTCGACCTCTCGATGCGGCCGTCGCCGGGACTGGAGGAGATCGAACTCTAC
CCGGTGAACGAGCCGTATGCCTATGTCCGGGTGACTTACGACAGCACGACGCACGAGTACACCTACAATGTCCTCGAACC
CGTGCTCACGCCCGGTGAACAGGAACTCTTCGGGGAGATCAAGGAGCGCCTCTTTGAGACGCTCGACATCACCACCCGGG
ACCTCACCCGCGATGAGGCAAGGAAGGCGCTCCGGGACGCGGCGAACACCATCATCGCCGATTACGGGATCCGCCTCGAG
CCGCCCGGGCGGGAGAAGATCCTCTATCACGTGGAGAAGGAGTTCCTCGGCGACGGGCTGATCGACCCGGTGATGCATGA
CGGCTACATCGAGGATATCTCCTGCGACGGCGTAGGAAGCGCCATCTTCGTCTATCACACGACGTATGAATCGATGAAGA
CGAGCCTCATCTACCGCGATGCTGCCGAACTTGATTCGTTCGTCACGAAACTTGCGCAACGGGCCGGGAAGTACATCTCG
ATCGCTGAACCGATGCTTGACGCCACAATGAGCGACGGGTCACGTATCCAGATGACGCTCGGGTCAGAGGTGACCGCCCA
CGGCTCGACGTTCACGATCCGAAAGTTCCGTGAGGAGCCGATTACGCCGACCGATCTTATCGAGTGGCACACCTTCTCGC
CGCTCGGGATCGCCTTCCTCTGGCTTGCGGTCGAGAACGCCAAGTCCTGCATATTTGCCGGCGGGACGGCGTCCGGGAAG
ACGACGACCTTGAACGCCATATCGCTCTTCATCCCGCCGCTTGCAAAGATCGTGACGCTTGAGGATACCCGTGAGTTGAA
ACTCCCTCACCCGAACTGGATCCCGAGCATCACCCGGGACTCGTTCTCGCAGGACGGGCGGGGCGAGATCGATATGTATG
AACTCCTGCGTGCCGCCCTCCGGCAGCGTCCTGAGTACATCCTGGTCGGCGAGGTCCGTGGCCGCGAGGCCCTGACGCTT
TTCCAAGCGATGAGCACCGGACACGTCACCTACGCGACGATGCACGCAGACTCGGTGGCGAGCGCCGTCCACCGTCTGGA
GAACCCGCCGATCAACGTGCCGAGAAACATGCTCTCGGCGCTCTCCCTGATGTCAATCCAGGTGCAGGCCCGGGTTGGCG
GCCAGCGGATCCGGCGGAACAAGCAGCTCATCGAGATCCTGGATATCGATCCCAGGACGAACGAGCTGATCACGAACGAG
GTCTTCAGGTGGCACCCGGCGACCGATGAGATCCGCTACTCCGGCAAGTCCTACATCCTTGAGCAGATCATGGAGGACCG
GGGATGGAGCGAGGAGCGGATGCAGGAAGAACTGAAACGGCGGCAGGAGGTGCTCGAATGGATGCGCATCAAGAAGATCC
GCTACTTCCGTGACGTGAGCAAGATCCTGGTCTCCTACTTCCGTGACCCCGAGACGGTCATCCAGCGGGTGCGCTCCGAC
CTCTACGGGGAGGGTGGTTCCGCATGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(429-680)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0X3BHB0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdL Methanoculleus thermophilus strain DSM 2373

78.389

92.203

0.723

Multiple sequence alignment