Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdJ   Type   Machinery gene
Locus tag   MAB1_RS01340 Genome accession   NZ_LT158599
Coordinates   274099..275022 (+) Length   307 a.a.
NCBI ID   WP_014866163.1    Uniprot ID   -
Organism   Methanoculleus bourgensis isolate Methanoculleus sp MAB1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 269099..280022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MAB1_RS01320 (MMAB1_0327) hisI 269532..269897 (-) 366 WP_014866159.1 phosphoribosyl-AMP cyclohydrolase -
  MAB1_RS01325 (MMAB1_0328) - 269904..270707 (-) 804 WP_014866161.1 A24 family peptidase C-terminal domain-containing protein -
  MAB1_RS01330 (MMAB1_0329) - 271051..271689 (+) 639 WP_048104419.1 hypothetical protein -
  MAB1_RS01335 (MMAB1_0330) epdL 271676..274102 (+) 2427 WP_062261359.1 type II/IV secretion system ATPase subunit Machinery gene
  MAB1_RS01340 (MMAB1_0331) epdJ 274099..275022 (+) 924 WP_014866163.1 type II secretion system F family protein Machinery gene
  MAB1_RS01345 (MMAB1_0332) epdK 275025..276062 (+) 1038 WP_062261362.1 type II secretion system F family protein Machinery gene
  MAB1_RS01350 (MMAB1_0334) - 277291..277809 (-) 519 WP_062261365.1 acylphosphatase -
  MAB1_RS01355 (MMAB1_0336) - 278025..279488 (-) 1464 WP_062261368.1 cobyric acid synthase -

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 34352.19 Da        Isoelectric Point: 7.9010

>NTDB_id=1143600 MAB1_RS01340 WP_014866163.1 274099..275022(+) (epdJ) [Methanoculleus bourgensis isolate Methanoculleus sp MAB1]
MNSYERFCFNLIGRDLKKKRGDFISLRKDLMGARMNTPFEAYLATAYVSSVVVGLAAAVLIGLFTYLLRVPEMITYRGAV
PEFFYALNDYKLVIGTIIITVLSLLIFGGISYLIFLLYPGIRAGERRRNIDATLPYAINYVTAMSSAGITPDEVFRLLGQ
SKIYGESAVEARYVSRETDFFGKDLLEALRTVSQATPSERMREFLQGAVASISSGSNLTEYFRTKAHQYTLENNQQQKTF
LETLGLIAESYVTAMVAGMLFLIILQSVMTILSGDSNPLFLYIIIYLIVPFGSMMFVILISSMTPEV

Nucleotide


Download         Length: 924 bp        

>NTDB_id=1143600 MAB1_RS01340 WP_014866163.1 274099..275022(+) (epdJ) [Methanoculleus bourgensis isolate Methanoculleus sp MAB1]
ATGAACAGTTATGAGCGGTTCTGCTTCAACCTGATCGGCCGGGACTTAAAGAAGAAGCGGGGGGACTTCATCAGCCTCCG
CAAGGATCTCATGGGGGCCCGGATGAATACGCCGTTTGAGGCTTACCTTGCGACCGCCTACGTCTCCTCGGTTGTCGTGG
GGCTGGCCGCCGCCGTGCTCATCGGGCTCTTTACCTACCTCCTGAGGGTCCCTGAGATGATCACCTACCGGGGGGCGGTC
CCTGAGTTTTTCTACGCGTTGAACGATTACAAACTCGTGATCGGCACCATCATCATCACGGTCCTCTCGCTCCTGATCTT
CGGCGGCATATCCTACCTGATCTTCCTCCTCTATCCTGGCATACGGGCTGGAGAGCGTCGCCGGAACATCGACGCCACCC
TGCCCTACGCCATCAACTACGTCACCGCGATGTCCTCGGCAGGGATCACCCCCGACGAGGTCTTCCGGCTGCTCGGCCAG
AGTAAGATCTACGGCGAGAGCGCCGTTGAGGCGCGTTACGTCTCCCGGGAGACCGACTTCTTCGGGAAGGACCTCCTTGA
AGCCCTGCGGACGGTCTCGCAGGCGACGCCGAGCGAACGGATGCGGGAATTCCTGCAGGGGGCTGTTGCGAGCATCTCGA
GCGGGAGTAACCTCACAGAGTATTTCCGCACGAAGGCTCACCAGTATACGCTTGAGAACAACCAGCAGCAGAAGACGTTC
CTCGAGACGCTCGGGCTGATCGCGGAGTCCTACGTCACCGCGATGGTTGCGGGTATGCTCTTCCTGATCATCCTGCAGTC
GGTGATGACGATCCTCTCCGGTGACTCGAATCCGCTCTTCCTCTACATCATCATCTACCTGATCGTGCCGTTCGGGAGCA
TGATGTTCGTCATCCTGATCAGTTCCATGACCCCGGAGGTGTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(138-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdJ Methanoculleus thermophilus strain DSM 2373

91.857

100

0.919

Multiple sequence alignment