Detailed information NTG1143517

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AC2117_RS19165
• Genome accession: NZ_LS999521
• Coordinates: 3576821..3577681 (+)
• Length: 286 a.a.
• NCBI ID: WP_133975672.1
• Uniprot ID: A0A446ZNV2
• Organism: Acinetobacter calcoaceticus isolate Acinetobacter calcoaceticus str. 2117
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3571821..3582681

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AC2117_RS17085 (AC2117_03387)	secG	3572427..3572756 (-)	330	WP_092710024.1	preprotein translocase subunit SecG	-
AC2117_RS17090 (AC2117_03388)	tpiA	3572769..3573563 (-)	795	WP_133975666.1	triose-phosphate isomerase	-
AC2117_RS17095 (AC2117_03389)	pilB	3573855..3575567 (+)	1713	WP_133975668.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AC2117_RS17100 (AC2117_03390)	pilC	3575595..3576821 (+)	1227	WP_133975670.1	type II secretion system F family protein	Machinery gene
AC2117_RS19165 (AC2117_03391)	pilD	3576821..3577681 (+)	861	WP_133975672.1	prepilin peptidase	Machinery gene
AC2117_RS17110 (AC2117_03392)	coaE	3577683..3578279 (+)	597	WP_133975674.1	dephospho-CoA kinase	-
AC2117_RS17115 (AC2117_03393)	-	3578276..3579190 (-)	915	WP_133975676.1	DMT family transporter	-
AC2117_RS17120 (AC2117_03394)	rlmB	3579226..3579975 (-)	750	WP_133975678.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
AC2117_RS17125 (AC2117_03395)	-	3580078..3580404 (-)	327	WP_003654567.1	pyrimidine/purine nucleoside phosphorylase	-
AC2117_RS17130 (AC2117_03396)	-	3580481..3581791 (-)	1311	WP_133975680.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32097.54 Da
• Isoelectric Point: 6.0738

>NTDB_id=1143517 AC2117_RS19165 WP_133975672.1 3576821..3577681(+) (pilD) [Acinetobacter calcoaceticus isolate Acinetobacter calcoaceticus str. 2117]
MQEMIAYFIQNLTALYIAVALLSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLDPEQPIIDHEKLTLSKPASSCPECHQT
IRWYQNIPVISWLVLKGKCGHCEHAISMRYPAIELLTMACSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFSIYTTPTLAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=1143517 AC2117_RS19165 WP_133975672.1 3576821..3577681(+) (pilD) [Acinetobacter calcoaceticus isolate Acinetobacter calcoaceticus str. 2117]
ATGCAAGAAATGATTGCTTATTTTATTCAAAACTTAACTGCACTTTATATTGCAGTTGCACTATTGAGCCTGTGTATTGG
TAGCTTTTTGAATGTGGTGATTTATCGCACTCCAAAAATGATGGAACAAGATTGGCAGCAAGAATGTCAAATGTTACTCG
ATCCTGAACAGCCCATTATTGACCATGAAAAACTGACATTAAGTAAGCCTGCTTCCTCATGCCCAGAGTGTCATCAAACC
ATCCGTTGGTATCAAAATATTCCTGTCATAAGTTGGTTGGTTTTAAAAGGTAAATGTGGGCATTGTGAGCATGCAATTAG
CATGCGCTACCCAGCCATCGAACTATTAACAATGGCATGTTCACTGGTTGTGGTCATGGTGTTTGGCCCAACCATACAAA
TGCTTTTTGGACTAGTACTGACTTGGGTCCTGATTGCTCTAACATTTATTGATTTTGATACTCAGCTGCTACCCGACCGT
TTTACCCTGCCTTTAGCAGCACTTGGTTTAGGCATTAATACCTTTAGCATTTACACCACACCCACTTTAGCCATTTGGGG
TTACTTAATTGGTTTTTTATGCCTATGGATTGTGTATTACCTATTTAAAGTAATCACAGGTAAAGAAGGCATGGGCTACG
GCGACTTTAAGTTGCTTGCGGCATTAGGTGCATGGATGGGGCCATTGATGCTGCCATTAATTGTGCTATTGTCATCTTTA
TTGGGTGCAATTATTGGCATCATTTTACTAAAATTACGCAATGACAATCAGCCCTTTGCCTTTGGGCCGTATATTGCCAT
TGCAGGCTGGGTTGCCTTTTTATGGGGTGACCAGATTATGAAAATCTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

3D structure

• AlphaFold DB: A0A446ZNV2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	94.056	100	0.941
pilD	Acinetobacter baumannii D1279779	93.706	100	0.937
pilD	Vibrio cholerae strain A1552	52.381	95.455	0.5
pilD	Vibrio campbellii strain DS40M4	51.273	96.154	0.493
pilD	Neisseria gonorrhoeae MS11	45.455	92.308	0.42