Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PA5486_RS04335 Genome accession   NZ_LS998783
Coordinates   851417..851914 (+) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa isolate     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 846417..856914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PA5486_RS04320 (PA5486_00829) bfr 846425..846889 (+) 465 WP_003093668.1 bacterioferritin -
  PA5486_RS04325 (PA5486_00830) uvrA 846961..849798 (-) 2838 WP_003121863.1 excinuclease ABC subunit UvrA -
  PA5486_RS04330 (PA5486_00831) - 850012..851400 (+) 1389 WP_003103910.1 MFS transporter -
  PA5486_RS04335 (PA5486_00832) ssb 851417..851914 (+) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  PA5486_RS04340 (PA5486_00833) pchA 852003..853433 (-) 1431 WP_003118152.1 isochorismate synthase PchA -
  PA5486_RS04345 (PA5486_00834) pchB 853430..853735 (-) 306 WP_003106950.1 isochorismate lyase PchB -
  PA5486_RS04350 (PA5486_00835) pchC 853735..854490 (-) 756 WP_025297567.1 pyochelin biosynthesis editing thioesterase PchC -
  PA5486_RS04355 (PA5486_00836) pchD 854487..856130 (-) 1644 WP_015649689.1 pyochelin biosynthesis salicyl-AMP ligase PchD -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=1143371 PA5486_RS04335 WP_003114685.1 851417..851914(+) (ssb) [Pseudomonas aeruginosa isolate]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=1143371 PA5486_RS04335 WP_003114685.1 851417..851914(+) (ssb) [Pseudomonas aeruginosa isolate]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGATTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAGCAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAACCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515

Multiple sequence alignment