Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   D5R51_RS08145 Genome accession   NZ_LS997867
Coordinates   1775570..1775881 (-) Length   103 a.a.
NCBI ID   WP_001166109.1    Uniprot ID   A0AAX1QU99
Organism   Vibrio paracholerae strain NCTC 30     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1770570..1780881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D5R51_RS08120 (SAMEA104470976_01624) lapB 1770762..1771931 (-) 1170 WP_000889965.1 lipopolysaccharide assembly protein LapB -
  D5R51_RS08125 (SAMEA104470976_01625) - 1771943..1772224 (-) 282 WP_000691487.1 LapA family protein -
  D5R51_RS08130 (SAMEA104470976_01626) ihfB 1772363..1772641 (-) 279 WP_000167341.1 integration host factor subunit beta -
  D5R51_RS08135 (SAMEA104470976_01627) rpsA 1772931..1774601 (-) 1671 WP_000140316.1 30S ribosomal protein S1 -
  D5R51_RS08140 (SAMEA104470976_01628) cmk 1774710..1775387 (-) 678 WP_000094750.1 (d)CMP kinase -
  D5R51_RS08145 (SAMEA104470976_01629) comEA 1775570..1775881 (-) 312 WP_001166109.1 ComEA family DNA-binding protein Machinery gene
  D5R51_RS08150 (SAMEA104470976_01630) ppiD 1776016..1777875 (-) 1860 WP_119091307.1 peptidylprolyl isomerase -
  D5R51_RS08155 (SAMEA104470976_01631) - 1778028..1778300 (-) 273 WP_001044516.1 HU family DNA-binding protein -
  D5R51_RS08160 (SAMEA104470976_01632) lon 1778484..1780844 (-) 2361 WP_001047611.1 endopeptidase La -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 10934.73 Da        Isoelectric Point: 5.0506

>NTDB_id=1143344 D5R51_RS08145 WP_001166109.1 1775570..1775881(-) (comEA) [Vibrio paracholerae strain NCTC 30]
MQIKTKVVTLLLSLCLPTLPLLANAEETAPAAQVEEGIVITVNINTASAEELATLLKGIGLKKAQAIVDYREANGPFSHI
DDLTNVKGIGEATVRNNATRILL

Nucleotide


Download         Length: 312 bp        

>NTDB_id=1143344 D5R51_RS08145 WP_001166109.1 1775570..1775881(-) (comEA) [Vibrio paracholerae strain NCTC 30]
ATGCAAATCAAAACCAAAGTAGTGACATTACTTCTTTCTCTCTGTCTGCCGACATTACCGTTACTGGCCAATGCCGAAGA
AACGGCACCTGCTGCACAGGTAGAAGAAGGTATTGTTATCACCGTCAACATTAACACCGCCTCGGCAGAAGAACTGGCGA
CGTTACTCAAAGGTATCGGGCTTAAGAAAGCTCAGGCGATTGTCGATTATCGAGAAGCCAACGGTCCATTTTCTCATATC
GATGATTTGACGAATGTAAAAGGGATTGGTGAAGCTACGGTGCGCAACAACGCCACGAGGATCTTGTTGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(41-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

96.117

100

0.961
  comEA Vibrio cholerae strain A1552

96.117

100

0.961
  comEA Vibrio parahaemolyticus RIMD 2210633

62.766

91.262

0.573
  comEA Vibrio campbellii strain DS40M4

58.333

93.204

0.544

Multiple sequence alignment