Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   D5R51_RS04545 Genome accession   NZ_LS997867
Coordinates   948257..948844 (+) Length   195 a.a.
NCBI ID   WP_162891917.1    Uniprot ID   -
Organism   Vibrio paracholerae strain NCTC 30     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 943257..953844
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D5R51_RS04525 (SAMEA104470976_00901) panP 943579..945225 (-) 1647 WP_000253190.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -
  D5R51_RS04530 (SAMEA104470976_00902) - 945335..945844 (-) 510 WP_000826868.1 hypothetical protein -
  D5R51_RS04535 (SAMEA104470976_00903) - 946033..946938 (-) 906 WP_119090993.1 lysine exporter LysO family protein -
  D5R51_RS04540 (SAMEA104470976_00904) - 946959..947879 (-) 921 WP_000019000.1 HDOD domain-containing protein -
  D5R51_RS04545 (SAMEA104470976_00905) tfoX 948257..948844 (+) 588 WP_162891917.1 TfoX/Sxy family DNA transformation protein Regulator
  D5R51_RS04550 (SAMEA104470976_00906) - 948940..949488 (-) 549 WP_108314962.1 hypothetical protein -
  D5R51_RS04555 (SAMEA104470976_00907) - 949679..950176 (-) 498 WP_001031965.1 response regulator -
  D5R51_RS04560 (SAMEA104470976_00908) - 950173..952128 (-) 1956 WP_119090995.1 ATP-binding protein -
  D5R51_RS04565 (SAMEA104470976_00909) - 952351..953616 (+) 1266 WP_119090996.1 YdgA family protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22838.10 Da        Isoelectric Point: 6.9718

>NTDB_id=1143338 D5R51_RS04545 WP_162891917.1 948257..948844(+) (tfoX) [Vibrio paracholerae strain NCTC 30]
MNEQQFFDYVTKFGAYQKRSMFGGIGLFQHDAMYVLVSEDRIFVRGGEELDPELLALGCEKYRHVKKQTTATVNYYDITE
LYEQHHPELDSIIERSIQFSVNQREFQRSAASRRLRDLPNMQLTLERMVKKAGIDDVETFISLGAPEVFNKVRQAYGIDI
DVKLLWKFAGAIEGIHWKLLQEPRKRQLLESCQQR

Nucleotide


Download         Length: 588 bp        

>NTDB_id=1143338 D5R51_RS04545 WP_162891917.1 948257..948844(+) (tfoX) [Vibrio paracholerae strain NCTC 30]
ATGAATGAGCAACAGTTTTTCGACTACGTAACTAAGTTTGGCGCCTACCAAAAACGCTCGATGTTTGGTGGTATTGGCTT
GTTTCAACACGACGCTATGTATGTGTTGGTCAGTGAAGACCGCATTTTTGTGCGTGGTGGAGAAGAGCTCGACCCTGAGC
TCTTGGCTTTAGGATGCGAGAAATATCGCCATGTGAAAAAACAGACAACGGCAACCGTAAACTATTACGATATCACTGAA
TTGTATGAGCAACATCACCCTGAGCTAGACTCGATCATTGAACGTTCGATTCAGTTTTCTGTGAATCAGCGGGAATTTCA
ACGTTCAGCAGCCAGTCGTCGTTTACGGGATTTACCCAATATGCAACTGACTTTGGAACGCATGGTAAAAAAAGCAGGCA
TTGATGATGTGGAAACCTTTATCAGTTTGGGTGCACCAGAAGTGTTTAATAAAGTGCGTCAAGCTTATGGAATTGATATC
GATGTTAAACTGCTGTGGAAATTTGCAGGTGCGATTGAAGGAATTCACTGGAAACTGCTGCAAGAGCCGCGTAAGCGCCA
ACTGTTAGAAAGTTGCCAGCAGCGTTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(112-190)

TfoX N-terminal domain (TfoX_N)

(9-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

98.462

100

0.985
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

98.462

100

0.985
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

98.462

100

0.985
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

98.462

100

0.985
  tfoX Vibrio cholerae strain A1552

98.462

100

0.985
  tfoX Vibrio campbellii strain DS40M4

68.394

98.974

0.677
  tfoX Vibrio parahaemolyticus RIMD 2210633

67.876

98.974

0.672
  tfoX Aliivibrio fischeri ES114

58.511

96.41

0.564

Multiple sequence alignment