Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   D5R51_RS00555 Genome accession   NZ_LS997867
Coordinates   110505..110993 (-) Length   162 a.a.
NCBI ID   WP_162891867.1    Uniprot ID   -
Organism   Vibrio paracholerae strain NCTC 30     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 105505..115993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D5R51_RS00525 (SAMEA104470976_00107) gspL 105763..106974 (+) 1212 WP_162891865.1 type II secretion system protein GspL -
  D5R51_RS00530 (SAMEA104470976_00108) - 106984..107481 (+) 498 WP_162891866.1 type II secretion system protein M -
  D5R51_RS00535 (SAMEA104470976_00109) - 107483..108241 (+) 759 WP_000817146.1 type II secretion system protein N -
  D5R51_RS00540 (SAMEA104470976_00110) cysQ 108293..109120 (-) 828 WP_000106799.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  D5R51_RS00545 (SAMEA104470976_00111) nudE 109143..109691 (-) 549 WP_119090717.1 ADP compounds hydrolase NudE -
  D5R51_RS00550 (SAMEA104470976_00112) nfuA 109830..110417 (-) 588 WP_000070178.1 Fe-S biogenesis protein NfuA -
  D5R51_RS00555 (SAMEA104470976_00113) comF 110505..110993 (-) 489 WP_162891867.1 ComF family protein Machinery gene
  D5R51_RS18930 - 110993..111124 (-) 132 WP_162891868.1 adenylylsulfate kinase -
  D5R51_RS00560 (SAMEA104470976_00114) bioH 111300..112061 (+) 762 WP_197714893.1 pimeloyl-ACP methyl ester esterase BioH -
  D5R51_RS00565 (SAMEA104470976_00115) - 112218..112688 (+) 471 WP_000961396.1 hypothetical protein -
  D5R51_RS00570 (SAMEA104470976_00116) - 112783..115104 (-) 2322 WP_000030091.1 Tex family protein -
  D5R51_RS00575 (SAMEA104470976_00117) greB 115347..115829 (+) 483 WP_119090720.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 18775.65 Da        Isoelectric Point: 9.3011

>NTDB_id=1143324 D5R51_RS00555 WP_162891867.1 110505..110993(-) (comF) [Vibrio paracholerae strain NCTC 30]
MCVGDYRFPLSDAVHQLKYQRQFWQAPRLAKLLATQINEPAPLLCSVPLHWRRRWLRGFNQSDLLARELANVLNIEYDHQ
LFARRRATPHQQGLSKAQRIHNLRDAFVLNHLPKHQRIAIVDDVVTTGSTIRHLCDLLLDVGVQSIDIYCICRTPEPKDS
HG

Nucleotide


Download         Length: 489 bp        

>NTDB_id=1143324 D5R51_RS00555 WP_162891867.1 110505..110993(-) (comF) [Vibrio paracholerae strain NCTC 30]
ATGTGTGTCGGCGATTACCGCTTTCCACTTAGTGATGCGGTGCATCAACTCAAATACCAACGCCAGTTTTGGCAAGCGCC
GCGCTTGGCTAAGCTACTCGCCACCCAGATTAACGAGCCAGCCCCTTTGCTGTGCAGTGTACCGCTGCATTGGCGGCGAC
GTTGGCTACGCGGCTTTAATCAAAGCGATCTGCTGGCACGCGAATTAGCCAATGTGCTGAACATTGAATATGACCACCAA
CTCTTTGCACGCCGCCGAGCCACACCGCATCAACAAGGACTCAGCAAGGCGCAGCGCATACACAACCTACGCGATGCGTT
TGTGCTCAATCATTTACCGAAACATCAACGCATTGCGATTGTGGACGATGTTGTGACCACAGGCAGCACGATCCGACATT
TATGTGATTTACTGCTTGATGTCGGTGTGCAAAGCATTGATATTTACTGCATATGCCGCACTCCCGAGCCGAAAGATAGC
CACGGTTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(65-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

94.444

100

0.944
  comF Vibrio campbellii strain DS40M4

51.613

95.679

0.494
  comF Haemophilus influenzae 86-028NP

38.788

100

0.395
  comF Haemophilus influenzae Rd KW20

37.576

100

0.383
  comFC Legionella pneumophila strain ERS1305867

38.312

95.062

0.364
  comFC Legionella pneumophila str. Paris

38.312

95.062

0.364

Multiple sequence alignment