Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | CFU2785_RS13930 | Genome accession | NZ_LS992183 |
| Coordinates | 2795015..2795476 (+) | Length | 153 a.a. |
| NCBI ID | WP_134215761.1 | Uniprot ID | - |
| Organism | Citrobacter freundii isolate Citrobacter freundii str. U2785 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2756903..2800190 | 2795015..2795476 | within | 0 |
Gene organization within MGE regions
Location: 2756903..2800190
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CFU2785_RS26555 (CFU2785_02734) | - | 2756903..2759344 (-) | 2442 | WP_232051944.1 | hypothetical protein | - |
| CFU2785_RS13640 (CFU2785_02735) | - | 2759403..2761880 (-) | 2478 | WP_134215675.1 | host specificity factor TipJ family phage tail protein | - |
| CFU2785_RS13645 (CFU2785_02736) | - | 2761867..2762232 (-) | 366 | WP_134216477.1 | NlpC/P60 family protein | - |
| CFU2785_RS13650 (CFU2785_02737) | - | 2762246..2762716 (-) | 471 | WP_134215677.1 | hypothetical protein | - |
| CFU2785_RS13655 (CFU2785_02738) | - | 2762716..2763213 (-) | 498 | WP_134215679.1 | hypothetical protein | - |
| CFU2785_RS13660 (CFU2785_02739) | - | 2763213..2766698 (-) | 3486 | WP_134215682.1 | tape measure protein | - |
| CFU2785_RS13665 (CFU2785_02740) | - | 2766757..2767440 (-) | 684 | WP_134215684.1 | DUF6246 family protein | - |
| CFU2785_RS13670 (CFU2785_02741) | - | 2767500..2768243 (-) | 744 | WP_134215686.1 | Ig-like domain-containing protein | - |
| CFU2785_RS13675 (CFU2785_02742) | - | 2768306..2768689 (-) | 384 | WP_134215688.1 | hypothetical protein | - |
| CFU2785_RS13680 (CFU2785_02743) | - | 2768686..2769054 (-) | 369 | WP_134215690.1 | HK97 gp10 family phage protein | - |
| CFU2785_RS13685 (CFU2785_02744) | - | 2769057..2769407 (-) | 351 | WP_006808949.1 | hypothetical protein | - |
| CFU2785_RS13690 (CFU2785_02745) | - | 2769400..2769795 (-) | 396 | WP_232051945.1 | DUF6527 family protein | - |
| CFU2785_RS13700 (CFU2785_02747) | - | 2769902..2770282 (-) | 381 | WP_134215695.1 | hypothetical protein | - |
| CFU2785_RS13705 (CFU2785_02748) | - | 2770359..2770646 (-) | 288 | WP_134215697.1 | hypothetical protein | - |
| CFU2785_RS13710 (CFU2785_02749) | - | 2770686..2771717 (-) | 1032 | WP_134215698.1 | major capsid protein | - |
| CFU2785_RS13715 (CFU2785_02750) | - | 2771729..2772163 (-) | 435 | WP_134215699.1 | hypothetical protein | - |
| CFU2785_RS13720 (CFU2785_02751) | - | 2772163..2773548 (-) | 1386 | WP_134215701.1 | DUF2213 domain-containing protein | - |
| CFU2785_RS13725 (CFU2785_02752) | - | 2773626..2773826 (+) | 201 | WP_134215703.1 | hypothetical protein | - |
| CFU2785_RS13730 (CFU2785_02753) | - | 2773819..2774715 (-) | 897 | WP_232051990.1 | phage minor head protein | - |
| CFU2785_RS13735 (CFU2785_02754) | - | 2774747..2776195 (-) | 1449 | WP_134215706.1 | DUF1073 domain-containing protein | - |
| CFU2785_RS13740 (CFU2785_02755) | - | 2776207..2777679 (-) | 1473 | WP_134215707.1 | DNA-packaging protein | - |
| CFU2785_RS13745 (CFU2785_02756) | - | 2777666..2778292 (-) | 627 | WP_134215709.1 | terminase small subunit | - |
| CFU2785_RS13750 (CFU2785_02757) | - | 2778304..2778483 (-) | 180 | WP_134215711.1 | hypothetical protein | - |
| CFU2785_RS13755 (CFU2785_02758) | - | 2778458..2778676 (-) | 219 | WP_134215713.1 | hypothetical protein | - |
| CFU2785_RS13760 (CFU2785_02759) | - | 2778832..2779350 (-) | 519 | WP_134216478.1 | Rha family transcriptional regulator | - |
| CFU2785_RS13765 (CFU2785_02760) | - | 2779557..2780018 (-) | 462 | WP_134215714.1 | lysis protein | - |
| CFU2785_RS13770 (CFU2785_02761) | - | 2780015..2780491 (-) | 477 | WP_134215716.1 | glycoside hydrolase family protein | - |
| CFU2785_RS13775 (CFU2785_02762) | - | 2780478..2780783 (-) | 306 | WP_026080593.1 | phage holin family protein | - |
| CFU2785_RS13785 (CFU2785_02764) | - | 2781150..2781839 (-) | 690 | WP_134215718.1 | bacteriophage antitermination protein Q | - |
| CFU2785_RS13790 (CFU2785_02765) | - | 2781836..2781952 (-) | 117 | WP_134215720.1 | hypothetical protein | - |
| CFU2785_RS13795 (CFU2785_02766) | - | 2781949..2782332 (-) | 384 | WP_134215722.1 | hypothetical protein | - |
| CFU2785_RS13800 (CFU2785_02767) | rusA | 2782329..2782691 (-) | 363 | WP_134215724.1 | crossover junction endodeoxyribonuclease RusA | - |
| CFU2785_RS13805 (CFU2785_02768) | - | 2782688..2782978 (-) | 291 | WP_015964709.1 | DUF1364 domain-containing protein | - |
| CFU2785_RS13810 | - | 2782971..2783141 (-) | 171 | WP_134215726.1 | NinE family protein | - |
| CFU2785_RS13815 (CFU2785_02769) | - | 2783134..2783583 (-) | 450 | WP_134215728.1 | recombination protein NinB | - |
| CFU2785_RS13825 (CFU2785_02771) | - | 2784097..2784789 (-) | 693 | WP_134215732.1 | DUF551 domain-containing protein | - |
| CFU2785_RS13830 (CFU2785_02772) | - | 2784786..2785151 (-) | 366 | WP_134215735.1 | HNH endonuclease | - |
| CFU2785_RS13835 (CFU2785_02773) | - | 2785153..2785479 (-) | 327 | WP_048224838.1 | hypothetical protein | - |
| CFU2785_RS13840 (CFU2785_02774) | - | 2785481..2785915 (-) | 435 | WP_232051946.1 | ead/Ea22-like family protein | - |
| CFU2785_RS13845 (CFU2785_02775) | - | 2785924..2786124 (-) | 201 | WP_134215739.1 | hypothetical protein | - |
| CFU2785_RS26560 (CFU2785_02776) | - | 2786121..2786549 (-) | 429 | WP_232051947.1 | hypothetical protein | - |
| CFU2785_RS13865 (CFU2785_02779) | - | 2787111..2787413 (-) | 303 | WP_134215744.1 | hypothetical protein | - |
| CFU2785_RS13870 (CFU2785_02780) | - | 2787413..2788846 (-) | 1434 | WP_134215746.1 | DnaB-like helicase C-terminal domain-containing protein | - |
| CFU2785_RS13875 (CFU2785_02781) | - | 2788836..2789732 (-) | 897 | WP_134215748.1 | DNA replication protein | - |
| CFU2785_RS13880 (CFU2785_02782) | - | 2789725..2789868 (-) | 144 | WP_134215750.1 | DUF2740 family protein | - |
| CFU2785_RS13885 (CFU2785_02783) | - | 2789894..2790193 (-) | 300 | WP_134215752.1 | CII family transcriptional regulator | - |
| CFU2785_RS13890 (CFU2785_02784) | - | 2790333..2790563 (-) | 231 | WP_052928615.1 | hypothetical protein | - |
| CFU2785_RS13895 (CFU2785_02785) | - | 2790643..2791350 (+) | 708 | WP_134216479.1 | helix-turn-helix transcriptional regulator | - |
| CFU2785_RS13900 (CFU2785_02786) | - | 2791864..2792124 (+) | 261 | WP_110820164.1 | hypothetical protein | - |
| CFU2785_RS13905 (CFU2785_02787) | - | 2792286..2792528 (+) | 243 | WP_134215754.1 | hypothetical protein | - |
| CFU2785_RS26265 (CFU2785_02788) | - | 2792525..2792683 (+) | 159 | WP_172616062.1 | hypothetical protein | - |
| CFU2785_RS13910 (CFU2785_02789) | - | 2792680..2792889 (+) | 210 | WP_134215756.1 | cell division protein FtsZ | - |
| CFU2785_RS13915 (CFU2785_02790) | - | 2792961..2793932 (+) | 972 | WP_134215757.1 | hypothetical protein | - |
| CFU2785_RS13920 (CFU2785_02791) | - | 2793940..2794137 (+) | 198 | WP_003833701.1 | hypothetical protein | - |
| CFU2785_RS26270 (CFU2785_02792) | - | 2794134..2794292 (+) | 159 | WP_172616063.1 | hypothetical protein | - |
| CFU2785_RS13925 (CFU2785_02793) | - | 2794289..2795014 (+) | 726 | WP_134215759.1 | Rad52/Rad22 family DNA repair protein | - |
| CFU2785_RS13930 (CFU2785_02794) | ssb | 2795015..2795476 (+) | 462 | WP_134215761.1 | single-stranded DNA-binding protein | Machinery gene |
| CFU2785_RS13935 (CFU2785_02795) | - | 2795485..2796033 (+) | 549 | WP_134215763.1 | 3'-5' exonuclease | - |
| CFU2785_RS13940 (CFU2785_02796) | - | 2796051..2796335 (+) | 285 | WP_134215765.1 | hypothetical protein | - |
| CFU2785_RS13945 (CFU2785_02797) | - | 2796328..2796879 (+) | 552 | WP_134215767.1 | phage N-6-adenine-methyltransferase | - |
| CFU2785_RS13950 (CFU2785_02798) | - | 2796876..2797094 (+) | 219 | WP_134215769.1 | hypothetical protein | - |
| CFU2785_RS13955 | - | 2797189..2797371 (+) | 183 | WP_126956111.1 | hypothetical protein | - |
| CFU2785_RS13960 (CFU2785_02799) | - | 2797368..2797589 (+) | 222 | WP_126956109.1 | TraR/DksA family transcriptional regulator | - |
| CFU2785_RS13965 (CFU2785_02801) | - | 2797788..2798027 (+) | 240 | WP_126956107.1 | DUF4222 domain-containing protein | - |
| CFU2785_RS13970 (CFU2785_02802) | - | 2798037..2798684 (+) | 648 | WP_134215771.1 | hypothetical protein | - |
| CFU2785_RS13975 (CFU2785_02803) | - | 2798788..2799024 (+) | 237 | WP_134215773.1 | helix-turn-helix domain-containing protein | - |
| CFU2785_RS13980 (CFU2785_02804) | - | 2798982..2800190 (-) | 1209 | WP_134215775.1 | tyrosine-type recombinase/integrase | - |
Sequence
Protein
Download Length: 153 a.a. Molecular weight: 16972.03 Da Isoelectric Point: 5.7776
>NTDB_id=1143241 CFU2785_RS13930 WP_134215761.1 2795015..2795476(+) (ssb) [Citrobacter freundii isolate Citrobacter freundii str. U2785]
MASRGVNKVILVGNLGQDPEVRYLPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVDKYTTEVLVNVGGTMQMLGGKQAEGKPAGNSQQPQRIQQQPAQQHNEPPMDFDDDIPF
MASRGVNKVILVGNLGQDPEVRYLPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVDKYTTEVLVNVGGTMQMLGGKQAEGKPAGNSQQPQRIQQQPAQQHNEPPMDFDDDIPF
Nucleotide
Download Length: 462 bp
>NTDB_id=1143241 CFU2785_RS13930 WP_134215761.1 2795015..2795476(+) (ssb) [Citrobacter freundii isolate Citrobacter freundii str. U2785]
ATGGCAAGCAGAGGCGTAAACAAAGTGATCCTCGTCGGCAACCTCGGGCAAGACCCTGAGGTTCGCTATCTACCAAATGG
TGGCGCGGTAGCCAATATCACACTGGCAACTTCGGAATCATGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACCG
AATGGCACCGGGTGGTGCTGTTTGGCAAGTTGGCTGAAGTAGCCAGCGAATATCTTCGAAAAGGTTCTCAGGTGTACATC
GAAGGCCAGTTACGCACACGGAAATGGACAGACCAATCTGGTGTGGATAAGTACACCACTGAGGTGTTGGTTAACGTCGG
TGGAACCATGCAGATGCTTGGCGGGAAGCAAGCAGAAGGAAAACCAGCAGGTAACAGCCAGCAACCACAACGGATACAGC
AGCAACCGGCACAACAGCACAACGAGCCGCCTATGGATTTTGACGACGATATTCCATTTTAA
ATGGCAAGCAGAGGCGTAAACAAAGTGATCCTCGTCGGCAACCTCGGGCAAGACCCTGAGGTTCGCTATCTACCAAATGG
TGGCGCGGTAGCCAATATCACACTGGCAACTTCGGAATCATGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACCG
AATGGCACCGGGTGGTGCTGTTTGGCAAGTTGGCTGAAGTAGCCAGCGAATATCTTCGAAAAGGTTCTCAGGTGTACATC
GAAGGCCAGTTACGCACACGGAAATGGACAGACCAATCTGGTGTGGATAAGTACACCACTGAGGTGTTGGTTAACGTCGG
TGGAACCATGCAGATGCTTGGCGGGAAGCAAGCAGAAGGAAAACCAGCAGGTAACAGCCAGCAACCACAACGGATACAGC
AGCAACCGGCACAACAGCACAACGAGCCGCCTATGGATTTTGACGACGATATTCCATTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
67.978 |
100 |
0.791 |
| ssb | Glaesserella parasuis strain SC1401 |
51.913 |
100 |
0.621 |
| ssb | Neisseria meningitidis MC58 |
40.909 |
100 |
0.471 |
| ssb | Neisseria gonorrhoeae MS11 |
40.909 |
100 |
0.471 |