Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   DQL00_RS05115 Genome accession   NZ_LS483523
Coordinates   932408..933067 (-) Length   219 a.a.
NCBI ID   WP_000565027.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 4041STDY6836169     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 927408..938067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL00_RS05085 - 927535..928101 (+) 567 WP_000601921.1 aminodeoxychorismate/anthranilate synthase component II -
  DQL00_RS05090 trpD 928112..929116 (+) 1005 WP_000658684.1 anthranilate phosphoribosyltransferase -
  DQL00_RS05095 trpC 929113..929880 (+) 768 WP_000076545.1 indole-3-glycerol phosphate synthase TrpC -
  DQL00_RS05100 - 929867..930466 (+) 600 WP_000169872.1 phosphoribosylanthranilate isomerase -
  DQL00_RS05105 trpB 930444..931667 (+) 1224 WP_000331298.1 tryptophan synthase subunit beta -
  DQL00_RS05110 trpA 931660..932436 (+) 777 WP_001126993.1 tryptophan synthase subunit alpha -
  DQL00_RS05115 cclA/cilC 932408..933067 (-) 660 WP_000565027.1 prepilin peptidase Machinery gene
  DQL00_RS05120 - 933137..933583 (+) 447 WP_000155408.1 GNAT family N-acetyltransferase -
  DQL00_RS05125 - 933811..934989 (-) 1179 WP_000175880.1 ROK family transcriptional regulator -
  DQL00_RS05130 - 935269..936531 (+) 1263 WP_023396417.1 PTS sugar transporter subunit IIC -
  DQL00_RS05135 - 936534..937430 (+) 897 WP_000825667.1 PEP phosphonomutase -
  DQL00_RS05140 - 937445..937762 (+) 318 WP_001151646.1 PTS sugar transporter subunit IIB -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24855.00 Da        Isoelectric Point: 7.2564

>NTDB_id=1142966 DQL00_RS05115 WP_000565027.1 932408..933067(-) (cclA/cilC) [Streptococcus pneumoniae strain 4041STDY6836169]
MIDFYFFLVGSILASFLGLVIDRFPEQSIISSVSHCDSCQTRLRPLDLIPILSQVFNRFCCRYCKVRYPVWYALFELGLG
LLFLLYSWELLSLGQVVLITAGLTLGIYDFHHQEYPLLVWMTFHLILIASSGWNLVMVSFLILGILAHFIDIRMGAGDFL
FLASCALVFSVTELLILIQFASATGILAFLLQKKKERLPFVPFLLLATCLIIFGKLLLV

Nucleotide


Download         Length: 660 bp        

>NTDB_id=1142966 DQL00_RS05115 WP_000565027.1 932408..933067(-) (cclA/cilC) [Streptococcus pneumoniae strain 4041STDY6836169]
ATGATTGATTTTTATTTTTTTCTCGTCGGGAGCATTCTCGCTTCCTTTCTTGGTTTGGTCATTGACCGTTTTCCAGAGCA
ATCCATTATCAGTTCAGTCAGTCACTGCGATTCCTGTCAGACTCGCTTGCGTCCCTTAGATTTGATTCCGATTCTCTCAC
AGGTCTTCAATCGCTTTTGCTGTCGCTACTGCAAGGTCCGCTATCCTGTCTGGTATGCCCTCTTTGAACTAGGCTTAGGA
CTCCTCTTTCTGCTTTACTCTTGGGAGTTGCTTTCCTTGGGGCAAGTCGTCCTAATCACCGCTGGTTTGACCTTGGGTAT
CTACGACTTTCACCATCAGGAATATCCCTTACTGGTCTGGATGACTTTCCACCTAATCCTAATAGCTTCCTCTGGCTGGA
ATCTGGTCATGGTCTCCTTCCTCATACTTGGAATTTTGGCTCATTTTATCGATATCCGCATGGGTGCAGGGGATTTCCTT
TTTTTAGCTTCTTGTGCTCTCGTCTTTAGCGTAACGGAGTTACTGATCTTGATTCAGTTCGCTTCTGCGACGGGTATCCT
GGCCTTTCTCCTGCAAAAGAAAAAGGAAAGACTTCCTTTCGTGCCTTTCCTCTTACTTGCTACTTGTTTGATTATTTTTG
GTAAGCTACTGCTTGTTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus pneumoniae Rx1

97.26

100

0.973
  cclA/cilC Streptococcus pneumoniae D39

97.26

100

0.973
  cclA/cilC Streptococcus pneumoniae R6

97.26

100

0.973
  cclA/cilC Streptococcus pneumoniae TIGR4

96.804

100

0.968
  cclA/cilC Streptococcus mitis SK321

91.781

100

0.918
  cclA/cilC Streptococcus mitis NCTC 12261

85.845

100

0.858

Multiple sequence alignment