Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   DQL00_RS02840 Genome accession   NZ_LS483523
Coordinates   532688..533350 (+) Length   220 a.a.
NCBI ID   WP_000649971.1    Uniprot ID   A0A0B7MFB3
Organism   Streptococcus pneumoniae strain 4041STDY6836169     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 527688..538350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL00_RS02805 tnpB 528139..528462 (+) 324 WP_000973416.1 IS66 family insertion sequence element accessory protein TnpB -
  DQL00_RS02810 - 528603..528911 (-) 309 Protein_526 transposase -
  DQL00_RS02815 - 528884..529422 (+) 539 Protein_527 IS66 family transposase -
  DQL00_RS02825 cysK 529497..530417 (-) 921 WP_000029860.1 cysteine synthase A -
  DQL00_RS02830 - 530702..531337 (-) 636 WP_000395739.1 YigZ family protein -
  DQL00_RS02835 comFA/cflA 531393..532691 (+) 1299 WP_000867616.1 DEAD/DEAH box helicase Machinery gene
  DQL00_RS02840 comFC/cflB 532688..533350 (+) 663 WP_000649971.1 ComF family protein Machinery gene
  DQL00_RS02845 hpf 533430..533978 (+) 549 WP_000599104.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  DQL00_RS02850 - 534114..536087 (+) 1974 WP_000715115.1 DHH family phosphoesterase -
  DQL00_RS02855 rplI 536084..536536 (+) 453 WP_000864220.1 50S ribosomal protein L9 -
  DQL00_RS02860 dnaB 536580..537932 (+) 1353 WP_000852486.1 replicative DNA helicase -
  DQL00_RS02865 - 537934..538200 (+) 267 WP_001278167.1 Veg family protein -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25241.10 Da        Isoelectric Point: 7.3688

>NTDB_id=1142933 DQL00_RS02840 WP_000649971.1 532688..533350(+) (comFC/cflB) [Streptococcus pneumoniae strain 4041STDY6836169]
MKCLLCGQTMKTVLTFSSLLLLRNDDSCLCSDCDSTFERIGEENCPNCMKTELSTKCQDCQLWCKEGVEVSHRAIFTYNQ
AMKDFFSRYKFDGDFLLRKVFASFLSEELKKYKEYQFVVIPLSPDRYANRGFNQVEGLVEAAGFEYLDLLEKREERASSS
KNRSERLGTELPFFIKSGVTIPKKILLIDDIYTTGATINRVKKLLEEAGAKDVKTFSLVR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=1142933 DQL00_RS02840 WP_000649971.1 532688..533350(+) (comFC/cflB) [Streptococcus pneumoniae strain 4041STDY6836169]
ATGAAGTGCTTGTTATGTGGGCAGACTATGAAGACTGTTTTAACTTTTAGTAGTCTCTTACTTCTGAGGAATGATGACTC
TTGTCTTTGTTCAGACTGTGATTCTACTTTTGAAAGAATTGGGGAAGAGAACTGTCCAAATTGTATGAAAACAGAGTTGT
CAACAAAGTGTCAAGATTGTCAACTTTGGTGTAAAGAGGGAGTTGAAGTCAGTCATAGAGCGATTTTTACTTACAATCAA
GCTATGAAGGATTTTTTCAGTCGGTATAAGTTTGATGGAGACTTCCTGTTAAGAAAAGTTTTCGCTTCATTTTTAAGTGA
GGAGTTGAAAAAGTACAAAGAGTATCAATTTGTTGTAATTCCCCTAAGTCCTGATAGATATGCTAATAGAGGATTTAATC
AGGTTGAGGGCTTGGTAGAGGCAGCAGGCTTTGAGTATCTGGATTTATTAGAGAAAAGAGAAGAGAGAGCCAGTTCTTCT
AAAAATCGTTCAGAGCGCTTGGGGACAGAACTTCCTTTCTTTATTAAAAGTGGAGTCACTATTCCTAAAAAAATCCTACT
TATAGATGATATCTATACTACAGGAGCAACTATAAATCGTGTTAAGAAACTGTTGGAAGAAGCTGGTGCTAAGGATGTAA
AAACATTTTCCCTTGTAAGATGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(153-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B7MFB3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae TIGR4

100

100

1
  comFC/cflB Streptococcus pneumoniae Rx1

99.545

100

0.995
  comFC/cflB Streptococcus pneumoniae D39

99.545

100

0.995
  comFC/cflB Streptococcus pneumoniae R6

99.545

100

0.995
  comFC/cflB Streptococcus mitis NCTC 12261

91.818

100

0.918
  comFC/cflB Streptococcus mitis SK321

91.364

100

0.914

Multiple sequence alignment