Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DQM83_RS15090 Genome accession   NZ_LS483499
Coordinates   3117938..3118483 (-) Length   181 a.a.
NCBI ID   WP_029990506.1    Uniprot ID   -
Organism   Tatumella ptyseos strain NCTC11468     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3112938..3123483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM83_RS15065 (NCTC11468_03388) fliQ 3113030..3113302 (+) 273 WP_025900986.1 flagellar biosynthesis protein FliQ -
  DQM83_RS15070 - 3113308..3114089 (+) 782 Protein_2914 flagellar biosynthetic protein FliR -
  DQM83_RS15075 (NCTC11468_03391) - 3114073..3115197 (+) 1125 WP_025900984.1 flagellar type III secretion system protein FlhB -
  DQM83_RS15080 (NCTC11468_03392) - 3115199..3117271 (+) 2073 WP_051170781.1 flagellar biosynthesis protein FlhA -
  DQM83_RS15085 (NCTC11468_03393) - 3117406..3117765 (-) 360 WP_029990508.1 ASCH domain-containing protein -
  DQM83_RS15090 (NCTC11468_03394) ssb 3117938..3118483 (-) 546 WP_029990506.1 single-stranded DNA-binding protein SSB1 Machinery gene
  DQM83_RS15095 (NCTC11468_03396) uvrA 3118936..3121766 (+) 2831 Protein_2919 excinuclease ABC subunit UvrA -
  DQM83_RS15100 (NCTC11468_03397) - 3121945..3123009 (+) 1065 WP_029990505.1 NAD(P)-dependent alcohol dehydrogenase -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19317.21 Da        Isoelectric Point: 5.2358

>NTDB_id=1142762 DQM83_RS15090 WP_029990506.1 3117938..3118483(-) (ssb) [Tatumella ptyseos strain NCTC11468]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVTNITLATSESWRDKQTGENKEITEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWQDQGGQDRYTTEVVVNVGGTMQMLGGRQGGNGGAPAGGQGNNNGWGQPQQPQQSQGGNQFSGGGSAPAARP
QQNSAPASSEPPMDFDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=1142762 DQM83_RS15090 WP_029990506.1 3117938..3118483(-) (ssb) [Tatumella ptyseos strain NCTC11468]
ATGGCCAGTCGCGGCGTTAACAAAGTGATTCTTGTCGGGAATCTGGGACAGGACCCGGAAGTCCGTTATATGCCAAATGG
TGGTGCGGTTACCAACATTACACTGGCCACCTCAGAAAGCTGGCGTGACAAGCAGACCGGTGAAAACAAAGAAATTACCG
AATGGCACCGTGTGGTTCTGTTCGGCAAACTGGCTGAAGTTGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTTTACATC
GAAGGTCAGTTACGTACCCGTAAATGGCAGGATCAGGGTGGTCAGGACCGTTACACGACCGAAGTGGTTGTTAACGTCGG
TGGTACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTAACGGCGGAGCACCTGCCGGCGGGCAGGGGAATAATAATGGCT
GGGGTCAGCCACAGCAGCCGCAGCAGTCACAGGGCGGTAACCAGTTCAGCGGCGGCGGTTCAGCACCGGCAGCACGTCCG
CAACAGAACAGCGCCCCGGCTAGCAGCGAACCACCGATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

70.43

100

0.724
  ssb Glaesserella parasuis strain SC1401

58.511

100

0.608
  ssb Neisseria meningitidis MC58

46.629

98.343

0.459
  ssb Neisseria gonorrhoeae MS11

45.604

100

0.459

Multiple sequence alignment