Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DQL57_RS10495 Genome accession   NZ_LS483491
Coordinates   2178696..2179211 (-) Length   171 a.a.
NCBI ID   WP_059107073.1    Uniprot ID   A0AAP8PNG1
Organism   Staphylococcus auricularis strain NCTC12101     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2173696..2184211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL57_RS10460 hchA 2173939..2174814 (-) 876 Protein_2021 glyoxalase III HchA -
  DQL57_RS10790 (NCTC12101_02201) - 2175094..2175261 (+) 168 WP_169791247.1 hypothetical protein -
  DQL57_RS10795 (NCTC12101_02202) - 2175330..2175470 (+) 141 WP_169791246.1 hypothetical protein -
  DQL57_RS10475 (NCTC12101_02206) - 2176461..2176790 (+) 330 WP_059107076.1 hypothetical protein -
  DQL57_RS10990 - 2176948..2177198 (+) 251 Protein_2025 SAR2788 family putative toxin -
  DQL57_RS10485 (NCTC12101_02207) - 2177212..2177820 (+) 609 WP_059107075.1 DUF3885 domain-containing protein -
  DQL57_RS10800 - 2177975..2178118 (-) 144 WP_170117175.1 hypothetical protein -
  DQL57_RS10490 (NCTC12101_02208) rpsR 2178410..2178652 (-) 243 WP_059107074.1 30S ribosomal protein S18 -
  DQL57_RS10495 (NCTC12101_02209) ssbA 2178696..2179211 (-) 516 WP_059107073.1 single-stranded DNA-binding protein Machinery gene
  DQL57_RS10500 (NCTC12101_02210) rpsF 2179231..2179536 (-) 306 WP_059107072.1 30S ribosomal protein S6 -
  DQL57_RS10505 (NCTC12101_02211) - 2179841..2180617 (+) 777 WP_232234387.1 GH25 family lysozyme -
  DQL57_RS10510 (NCTC12101_02212) ychF 2180705..2181802 (-) 1098 WP_059107070.1 redox-regulated ATPase YchF -
  DQL57_RS10515 (NCTC12101_02213) - 2181802..2182017 (-) 216 WP_059107069.1 DUF951 domain-containing protein -
  DQL57_RS10520 (NCTC12101_02214) - 2182039..2182923 (-) 885 WP_059107068.1 mechanosensitive ion channel family protein -
  DQL57_RS10525 (NCTC12101_02215) - 2183194..2184036 (-) 843 WP_059107105.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18870.40 Da        Isoelectric Point: 4.7172

>NTDB_id=1142700 DQL57_RS10495 WP_059107073.1 2178696..2179211(-) (ssbA) [Staphylococcus auricularis strain NCTC12101]
MINRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQADNVSNYLFKGSLAGVDGRLQSR
SYENQEGRRIFVTEVVCDSVQFLEPKGQNQRHSQDGNNNFQNFGQNNFGGQQSGQNTSSYSNNNDNGGSQSDNPFANANG
PIDISDDDLPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=1142700 DQL57_RS10495 WP_059107073.1 2178696..2179211(-) (ssbA) [Staphylococcus auricularis strain NCTC12101]
ATGATAAATAGAGTTGTATTAGTCGGTCGTTTAACGAAAGATCCAGAATATAGAACAACACCCTCAGGCGTGAGCGTTGC
GACATTTACGCTTGCTGTAAACCGTACGTTTACGAACGCACAAGGTGAACGTGAAGCAGATTTCATTAACTGTGTGGTAT
TTAGAAAACAAGCAGATAATGTAAGCAACTACTTATTTAAAGGTAGTTTAGCTGGCGTAGATGGACGTTTACAATCACGT
AGTTATGAAAACCAAGAAGGTCGACGTATCTTTGTGACAGAAGTTGTATGCGACAGTGTTCAATTCCTTGAACCTAAAGG
TCAAAACCAAAGACATTCACAAGATGGAAACAACAATTTCCAAAACTTTGGTCAAAACAACTTTGGCGGACAACAATCCG
GTCAAAATACGTCATCTTACTCAAACAATAACGATAATGGTGGATCACAATCTGATAACCCATTCGCAAATGCTAATGGA
CCTATCGATATCAGTGATGACGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

61.453

100

0.643
  ssb Latilactobacillus sakei subsp. sakei 23K

55.233

100

0.556
  ssb Glaesserella parasuis strain SC1401

34.783

100

0.374
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.273

64.327

0.368

Multiple sequence alignment