Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   DQL22_RS04670 Genome accession   NZ_LS483485
Coordinates   912779..913228 (-) Length   149 a.a.
NCBI ID   WP_111301448.1    Uniprot ID   -
Organism   Aggregatibacter aphrophilus strain NCTC11096     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 907779..918228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL22_RS04640 (NCTC11096_00933) - 908280..908546 (-) 267 WP_111301453.1 GNAT family N-acetyltransferase -
  DQL22_RS04645 (NCTC11096_00934) yacG 908546..908758 (-) 213 WP_005701268.1 DNA gyrase inhibitor YacG -
  DQL22_RS04650 (NCTC11096_00935) coaE 908751..909371 (-) 621 WP_111301452.1 dephospho-CoA kinase -
  DQL22_RS04655 (NCTC11096_00936) - 909424..910116 (-) 693 WP_111301451.1 prepilin peptidase -
  DQL22_RS04660 (NCTC11096_00937) pilC 910113..911351 (-) 1239 WP_111301450.1 type II secretion system F family protein Machinery gene
  DQL22_RS04665 (NCTC11096_00938) pilB 911344..912753 (-) 1410 WP_111711225.1 GspE/PulE family protein Machinery gene
  DQL22_RS04670 (NCTC11096_00939) pilA 912779..913228 (-) 450 WP_111301448.1 pilin Machinery gene
  DQL22_RS04675 (NCTC11096_00940) ampD 913354..913908 (+) 555 WP_111301458.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  DQL22_RS04680 (NCTC11096_00941) nanQ 914382..914852 (-) 471 WP_083014717.1 N-acetylneuraminate anomerase -
  DQL22_RS04685 (NCTC11096_00942) pnp 915122..917251 (+) 2130 WP_111301447.1 polyribonucleotide nucleotidyltransferase -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 15379.80 Da        Isoelectric Point: 8.8087

>NTDB_id=1142597 DQL22_RS04670 WP_111301448.1 912779..913228(-) (pilA) [Aggregatibacter aphrophilus strain NCTC11096]
MKIQSAFFSVKSVKKGFTLIELMIVIAIVAILATVAIPSYQNYTKKAAVSELLQASAPLRSEVELCIYNTGSVDNCTGGK
NGIQADVADATPKYVKSTAVKSGIITVVGKGSLDKVSYTLTAAGSATAGVTWTASCGTNADIFPAGFCS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=1142597 DQL22_RS04670 WP_111301448.1 912779..913228(-) (pilA) [Aggregatibacter aphrophilus strain NCTC11096]
ATGAAAATTCAGTCAGCATTTTTCTCTGTGAAATCCGTTAAAAAAGGATTTACATTAATTGAATTAATGATCGTGATTGC
GATAGTTGCCATCTTAGCTACTGTCGCGATTCCATCTTACCAAAATTACACCAAAAAAGCGGCAGTTTCCGAATTGTTAC
AAGCCTCGGCTCCACTTCGTTCCGAAGTCGAACTGTGCATTTACAATACGGGCAGTGTTGATAACTGCACCGGCGGAAAA
AATGGCATTCAAGCCGATGTCGCCGACGCTACCCCAAAATATGTGAAATCAACCGCAGTGAAAAGCGGCATCATTACCGT
GGTCGGAAAAGGCAGCTTGGATAAGGTGTCTTACACACTAACCGCGGCAGGTTCTGCAACTGCTGGCGTCACATGGACAG
CCTCTTGCGGCACTAACGCAGACATCTTCCCGGCCGGCTTCTGTTCATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(13-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Haemophilus influenzae 86-028NP

65.468

93.289

0.611
  pilA Haemophilus influenzae Rd KW20

64.539

94.631

0.611
  pilA Glaesserella parasuis strain SC1401

55.245

95.973

0.53

Multiple sequence alignment