Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | DQL22_RS04660 | Genome accession | NZ_LS483485 |
| Coordinates | 910113..911351 (-) | Length | 412 a.a. |
| NCBI ID | WP_111301450.1 | Uniprot ID | - |
| Organism | Aggregatibacter aphrophilus strain NCTC11096 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 905113..916351
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQL22_RS04630 (NCTC11096_00930) | raiA | 905989..906312 (-) | 324 | WP_109083655.1 | ribosome-associated translation inhibitor RaiA | - |
| DQL22_RS04635 (NCTC11096_00931) | - | 906539..907912 (-) | 1374 | WP_111301454.1 | alanine/glycine:cation symporter family protein | - |
| DQL22_RS04640 (NCTC11096_00933) | - | 908280..908546 (-) | 267 | WP_111301453.1 | GNAT family N-acetyltransferase | - |
| DQL22_RS04645 (NCTC11096_00934) | yacG | 908546..908758 (-) | 213 | WP_005701268.1 | DNA gyrase inhibitor YacG | - |
| DQL22_RS04650 (NCTC11096_00935) | coaE | 908751..909371 (-) | 621 | WP_111301452.1 | dephospho-CoA kinase | - |
| DQL22_RS04655 (NCTC11096_00936) | - | 909424..910116 (-) | 693 | WP_111301451.1 | prepilin peptidase | - |
| DQL22_RS04660 (NCTC11096_00937) | pilC | 910113..911351 (-) | 1239 | WP_111301450.1 | type II secretion system F family protein | Machinery gene |
| DQL22_RS04665 (NCTC11096_00938) | pilB | 911344..912753 (-) | 1410 | WP_111711225.1 | GspE/PulE family protein | Machinery gene |
| DQL22_RS04670 (NCTC11096_00939) | pilA | 912779..913228 (-) | 450 | WP_111301448.1 | pilin | Machinery gene |
| DQL22_RS04675 (NCTC11096_00940) | ampD | 913354..913908 (+) | 555 | WP_111301458.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| DQL22_RS04680 (NCTC11096_00941) | nanQ | 914382..914852 (-) | 471 | WP_083014717.1 | N-acetylneuraminate anomerase | - |
Sequence
Protein
Download Length: 412 a.a. Molecular weight: 46733.16 Da Isoelectric Point: 10.0112
>NTDB_id=1142595 DQL22_RS04660 WP_111301450.1 910113..911351(-) (pilC) [Aggregatibacter aphrophilus strain NCTC11096]
MCKLKLFNWHGVNRLQQKQEGTIVAESAVIAQQQLMSRGLQHIKLQQNWQLNSKPKNAEVCSLLSQLATLLQAAVPLKNS
LQILLQHCTNIALNAWLRQLLKDIESGLAFSQALEKQNVEKQNQYLTYQDRQLIKVGEMTGKLPTVCHEIAQHKQQALAL
QRKIRKILLYPVLVLGISLILTALLLLFIVPQFATMYDNSSAQLPTFTQVLLTLSQGLQDYWLHLLICMALTTLFIRARL
KHSPWFNRQKSRLINAMPVLNRIVQLSRLVGFSRSLFLMLQAGVPLNQALQSFLPQNPSWQRSPNVQGDWLLIEEVQSIL
HWLQQGYAFSASVSGHIFPLAAQQMLQVGEQSGQLPKMLQFIANDHQQQLDYQIDLLSQMLEPLLMVIIGGLIGLIMLGM
YLPIFNMGALVQ
MCKLKLFNWHGVNRLQQKQEGTIVAESAVIAQQQLMSRGLQHIKLQQNWQLNSKPKNAEVCSLLSQLATLLQAAVPLKNS
LQILLQHCTNIALNAWLRQLLKDIESGLAFSQALEKQNVEKQNQYLTYQDRQLIKVGEMTGKLPTVCHEIAQHKQQALAL
QRKIRKILLYPVLVLGISLILTALLLLFIVPQFATMYDNSSAQLPTFTQVLLTLSQGLQDYWLHLLICMALTTLFIRARL
KHSPWFNRQKSRLINAMPVLNRIVQLSRLVGFSRSLFLMLQAGVPLNQALQSFLPQNPSWQRSPNVQGDWLLIEEVQSIL
HWLQQGYAFSASVSGHIFPLAAQQMLQVGEQSGQLPKMLQFIANDHQQQLDYQIDLLSQMLEPLLMVIIGGLIGLIMLGM
YLPIFNMGALVQ
Nucleotide
Download Length: 1239 bp
>NTDB_id=1142595 DQL22_RS04660 WP_111301450.1 910113..911351(-) (pilC) [Aggregatibacter aphrophilus strain NCTC11096]
ATGTGTAAACTGAAATTATTTAACTGGCACGGGGTTAACCGTTTACAGCAAAAGCAGGAAGGCACTATTGTGGCGGAAAG
CGCCGTGATAGCACAACAACAGCTGATGTCACGCGGTTTACAACACATTAAACTGCAACAAAATTGGCAATTAAACAGCA
AACCTAAAAACGCGGAAGTCTGTTCGTTGCTTTCTCAGTTGGCGACCTTATTACAAGCGGCGGTTCCGTTAAAAAATAGT
CTGCAAATATTGTTACAACATTGCACCAATATTGCGCTAAACGCTTGGTTGCGCCAACTTTTAAAGGATATTGAAAGCGG
TTTGGCATTTTCCCAAGCCTTAGAAAAACAAAACGTAGAAAAACAAAATCAATATTTGACCTATCAAGATCGCCAATTGA
TTAAAGTCGGTGAAATGACGGGCAAGTTACCCACCGTATGCCATGAAATCGCGCAACACAAACAGCAGGCATTAGCGTTG
CAACGCAAGATTCGAAAAATTCTGCTTTACCCGGTGTTGGTGCTTGGCATATCGCTAATTTTAACCGCACTTTTACTGCT
GTTTATCGTGCCGCAATTCGCCACGATGTATGACAATAGTAGCGCGCAACTCCCGACTTTCACCCAAGTGCTACTCACAC
TCTCGCAAGGATTACAGGATTATTGGCTGCATCTGTTGATTTGTATGGCATTGACTACCCTATTTATTCGCGCCCGCCTA
AAGCACTCCCCTTGGTTTAATCGGCAAAAAAGTCGATTAATCAATGCCATGCCTGTACTGAATCGCATCGTGCAGCTTTC
CCGTTTGGTGGGATTTAGCCGCAGTTTATTTTTAATGTTACAGGCGGGCGTGCCGCTGAATCAGGCTTTGCAGTCGTTTT
TACCGCAAAATCCAAGTTGGCAAAGATCGCCAAACGTGCAAGGCGATTGGCTGTTAATCGAAGAAGTACAATCCATTTTA
CACTGGCTACAACAAGGTTATGCCTTCTCCGCCAGTGTGAGCGGTCATATTTTTCCGTTGGCGGCACAACAAATGCTACA
GGTGGGCGAACAAAGTGGTCAGCTCCCTAAAATGTTGCAATTTATCGCCAACGATCATCAGCAACAATTGGACTATCAGA
TCGATCTGCTGTCACAAATGCTGGAACCGCTGTTGATGGTCATTATCGGTGGGCTTATCGGCTTAATTATGCTCGGAATG
TATTTGCCGATTTTCAATATGGGCGCGTTAGTGCAATGA
ATGTGTAAACTGAAATTATTTAACTGGCACGGGGTTAACCGTTTACAGCAAAAGCAGGAAGGCACTATTGTGGCGGAAAG
CGCCGTGATAGCACAACAACAGCTGATGTCACGCGGTTTACAACACATTAAACTGCAACAAAATTGGCAATTAAACAGCA
AACCTAAAAACGCGGAAGTCTGTTCGTTGCTTTCTCAGTTGGCGACCTTATTACAAGCGGCGGTTCCGTTAAAAAATAGT
CTGCAAATATTGTTACAACATTGCACCAATATTGCGCTAAACGCTTGGTTGCGCCAACTTTTAAAGGATATTGAAAGCGG
TTTGGCATTTTCCCAAGCCTTAGAAAAACAAAACGTAGAAAAACAAAATCAATATTTGACCTATCAAGATCGCCAATTGA
TTAAAGTCGGTGAAATGACGGGCAAGTTACCCACCGTATGCCATGAAATCGCGCAACACAAACAGCAGGCATTAGCGTTG
CAACGCAAGATTCGAAAAATTCTGCTTTACCCGGTGTTGGTGCTTGGCATATCGCTAATTTTAACCGCACTTTTACTGCT
GTTTATCGTGCCGCAATTCGCCACGATGTATGACAATAGTAGCGCGCAACTCCCGACTTTCACCCAAGTGCTACTCACAC
TCTCGCAAGGATTACAGGATTATTGGCTGCATCTGTTGATTTGTATGGCATTGACTACCCTATTTATTCGCGCCCGCCTA
AAGCACTCCCCTTGGTTTAATCGGCAAAAAAGTCGATTAATCAATGCCATGCCTGTACTGAATCGCATCGTGCAGCTTTC
CCGTTTGGTGGGATTTAGCCGCAGTTTATTTTTAATGTTACAGGCGGGCGTGCCGCTGAATCAGGCTTTGCAGTCGTTTT
TACCGCAAAATCCAAGTTGGCAAAGATCGCCAAACGTGCAAGGCGATTGGCTGTTAATCGAAGAAGTACAATCCATTTTA
CACTGGCTACAACAAGGTTATGCCTTCTCCGCCAGTGTGAGCGGTCATATTTTTCCGTTGGCGGCACAACAAATGCTACA
GGTGGGCGAACAAAGTGGTCAGCTCCCTAAAATGTTGCAATTTATCGCCAACGATCATCAGCAACAATTGGACTATCAGA
TCGATCTGCTGTCACAAATGCTGGAACCGCTGTTGATGGTCATTATCGGTGGGCTTATCGGCTTAATTATGCTCGGAATG
TATTTGCCGATTTTCAATATGGGCGCGTTAGTGCAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Haemophilus influenzae Rd KW20 |
59.804 |
99.029 |
0.592 |
| pilC | Haemophilus influenzae 86-028NP |
59.559 |
99.029 |
0.59 |
| pilC | Glaesserella parasuis strain SC1401 |
40.394 |
98.544 |
0.398 |