Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | DQL67_RS06910 | Genome accession | NZ_LS483473 |
| Coordinates | 1481711..1482211 (+) | Length | 166 a.a. |
| NCBI ID | WP_005725039.1 | Uniprot ID | A0A379BD60 |
| Organism | Pasteurella multocida strain NCTC10382 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1476711..1487211
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQL67_RS06895 (NCTC10382_01407) | rlmB | 1477254..1477991 (+) | 738 | WP_005725044.1 | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | - |
| DQL67_RS06900 (NCTC10382_01408) | sodC | 1478077..1478637 (-) | 561 | WP_005725042.1 | superoxide dismutase family protein | - |
| DQL67_RS06905 (NCTC10382_01409) | uvrA | 1478708..1481539 (-) | 2832 | WP_111759170.1 | excinuclease ABC subunit UvrA | - |
| DQL67_RS06910 (NCTC10382_01410) | ssb | 1481711..1482211 (+) | 501 | WP_005725039.1 | single-stranded DNA-binding protein | Machinery gene |
| DQL67_RS06915 (NCTC10382_01411) | - | 1482362..1483642 (+) | 1281 | WP_083004546.1 | site-specific integrase | - |
| DQL67_RS06920 (NCTC10382_01412) | - | 1483629..1485149 (+) | 1521 | WP_172452382.1 | site-specific integrase | - |
| DQL67_RS11170 (NCTC10382_01413) | - | 1485152..1486195 (+) | 1044 | WP_231965571.1 | hypothetical protein | - |
| DQL67_RS11175 (NCTC10382_01414) | - | 1486241..1487188 (+) | 948 | WP_231965573.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 166 a.a. Molecular weight: 18657.68 Da Isoelectric Point: 5.3353
>NTDB_id=1142412 DQL67_RS06910 WP_005725039.1 1481711..1482211(+) (ssb) [Pasteurella multocida strain NCTC10382]
MAGVNKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWIDKNTNERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRNERQQTGGYAPQTAAPQYNAPTGGYGAQPSRPATKPAPQNEPPMDMGFE
EDNIPF
MAGVNKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWIDKNTNERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRNERQQTGGYAPQTAAPQYNAPTGGYGAQPSRPATKPAPQNEPPMDMGFE
EDNIPF
Nucleotide
Download Length: 501 bp
>NTDB_id=1142412 DQL67_RS06910 WP_005725039.1 1481711..1482211(+) (ssb) [Pasteurella multocida strain NCTC10382]
ATGGCTGGAGTAAATAAAGTAATTATTGTAGGGAACTTAGGTAACGATCCTGAAATCCGCACAATGCCAAATGGTGAAGC
CGTAGCCAATATCAGCGTCGCGACCAGTGAAAGCTGGATCGACAAAAATACTAACGAACGTCGTGAAGTCACCGAATGGC
ATCGCATCGTATTCTACCGTCGCCAAGCTGAAGTGGCTGGGGAATATCTGCGTAAAGGTTCAAAAGTGTATGTAGAAGGA
CGCCTAAAAACCCGTAAATGGCAAGACCAAAATGGGCAAGATCGCTACACTACCGAAATCCAAGGCGACGTGTTACAAAT
GCTCGACAGCCGTAACGAACGTCAACAAACCGGCGGCTACGCCCCACAAACCGCTGCGCCACAATATAATGCCCCAACAG
GTGGCTACGGTGCACAACCTTCTCGTCCAGCGACAAAACCCGCTCCACAAAACGAACCTCCAATGGACATGGGCTTTGAG
GAAGATAATATTCCGTTTTGA
ATGGCTGGAGTAAATAAAGTAATTATTGTAGGGAACTTAGGTAACGATCCTGAAATCCGCACAATGCCAAATGGTGAAGC
CGTAGCCAATATCAGCGTCGCGACCAGTGAAAGCTGGATCGACAAAAATACTAACGAACGTCGTGAAGTCACCGAATGGC
ATCGCATCGTATTCTACCGTCGCCAAGCTGAAGTGGCTGGGGAATATCTGCGTAAAGGTTCAAAAGTGTATGTAGAAGGA
CGCCTAAAAACCCGTAAATGGCAAGACCAAAATGGGCAAGATCGCTACACTACCGAAATCCAAGGCGACGTGTTACAAAT
GCTCGACAGCCGTAACGAACGTCAACAAACCGGCGGCTACGCCCCACAAACCGCTGCGCCACAATATAATGCCCCAACAG
GTGGCTACGGTGCACAACCTTCTCGTCCAGCGACAAAACCCGCTCCACAAAACGAACCTCCAATGGACATGGGCTTTGAG
GAAGATAATATTCCGTTTTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
69.231 |
100 |
0.759 |
| ssb | Vibrio cholerae strain A1552 |
53.591 |
100 |
0.584 |
| ssb | Neisseria meningitidis MC58 |
44.068 |
100 |
0.47 |
| ssb | Neisseria gonorrhoeae MS11 |
44.068 |
100 |
0.47 |