Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DQM71_RS14725 Genome accession   NZ_LS483472
Coordinates   3031670..3031771 (-) Length   33 a.a.
NCBI ID   WP_168713084.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain NCTC13421     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3026670..3036771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM71_RS14715 (NCTC13421_02941) - 3028986..3030191 (-) 1206 WP_002000389.1 hypothetical protein -
  DQM71_RS14720 (NCTC13421_02942) - 3030194..3031240 (-) 1047 WP_000027064.1 nucleoid-associated protein -
  DQM71_RS14725 ssb 3031670..3031771 (-) 102 WP_168713084.1 single-stranded DNA-binding protein Machinery gene
  DQM71_RS14730 (NCTC13421_02943) - 3031753..3033195 (-) 1443 WP_000003535.1 hypothetical protein -
  DQM71_RS20020 (NCTC13421_02944) - 3033418..3033534 (-) 117 WP_001992235.1 single-stranded DNA-binding protein -
  DQM71_RS14740 (NCTC13421_02945) - 3033868..3036333 (-) 2466 WP_001022397.1 DUF927 domain-containing protein -
  DQM71_RS14745 (NCTC13421_02946) - 3036346..3036624 (-) 279 WP_001064707.1 hypothetical protein -

Sequence

Protein


Download         Length: 33 a.a.        Molecular weight: 3621.22 Da        Isoelectric Point: 9.7265

>NTDB_id=1142380 DQM71_RS14725 WP_168713084.1 3031670..3031771(-) (ssb) [Acinetobacter baumannii strain NCTC13421]
MVSSQLAEISSKYLKKGGKVYVEGSLCTGKWKD

Nucleotide


Download         Length: 102 bp        

>NTDB_id=1142380 DQM71_RS14725 WP_168713084.1 3031670..3031771(-) (ssb) [Acinetobacter baumannii strain NCTC13421]
TTGGTTAGTTCCCAATTAGCCGAGATTTCCAGTAAGTACCTTAAGAAAGGTGGCAAGGTTTATGTTGAGGGTTCATTGTG
TACTGGGAAGTGGAAAGACTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-33)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

62.963

81.818

0.515
  ssb Vibrio cholerae strain A1552

55.172

87.879

0.485
  ssb Neisseria gonorrhoeae MS11

53.571

84.848

0.455
  ssb Neisseria meningitidis MC58

53.571

84.848

0.455

Multiple sequence alignment