Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   DQN71_RS05915 Genome accession   NZ_LS483471
Coordinates   1136177..1138141 (-) Length   654 a.a.
NCBI ID   WP_015605026.1    Uniprot ID   A0A512AAG4
Organism   Streptococcus cristatus strain NCTC13807     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1131177..1143141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN71_RS05880 (NCTC13807_01129) gyrA 1131524..1133974 (-) 2451 WP_015605022.1 DNA gyrase subunit A -
  DQN71_RS05885 (NCTC13807_01130) - 1134182..1135168 (+) 987 WP_015605023.1 L-lactate dehydrogenase -
  DQN71_RS05890 (NCTC13807_01131) - 1135206..1135463 (-) 258 Protein_1065 NUDIX hydrolase -
  DQN71_RS05900 (NCTC13807_01132) - 1135617..1135775 (-) 159 Protein_1066 NUDIX hydrolase -
  DQN71_RS05915 (NCTC13807_01134) amiA 1136177..1138141 (-) 1965 WP_015605026.1 peptide ABC transporter substrate-binding protein Regulator
  DQN71_RS05920 (NCTC13807_01135) - 1138411..1138665 (+) 255 WP_015605027.1 metal-sensitive transcriptional regulator -
  DQN71_RS05930 (NCTC13807_01136) - 1138866..1139159 (-) 294 WP_015605028.1 rhodanese-like domain-containing protein -
  DQN71_RS05935 (NCTC13807_01137) - 1139156..1140808 (-) 1653 WP_111694542.1 FAD-dependent oxidoreductase -
  DQN71_RS05940 (NCTC13807_01138) - 1140822..1141130 (-) 309 WP_015605030.1 rhodanese-like domain-containing protein -
  DQN71_RS05945 (NCTC13807_01139) rpmA 1141262..1141555 (-) 294 WP_003032879.1 50S ribosomal protein L27 -
  DQN71_RS05950 (NCTC13807_01140) - 1141573..1141917 (-) 345 WP_015605031.1 ribosomal-processing cysteine protease Prp -
  DQN71_RS05955 (NCTC13807_01141) rplU 1141933..1142247 (-) 315 WP_015605032.1 50S ribosomal protein L21 -
  DQN71_RS05960 (NCTC13807_01142) - 1142479..1143075 (-) 597 WP_111694543.1 hypothetical protein -

Sequence

Protein


Download         Length: 654 a.a.        Molecular weight: 72723.80 Da        Isoelectric Point: 4.7515

>NTDB_id=1142318 DQN71_RS05915 WP_015605026.1 1136177..1138141(-) (amiA) [Streptococcus cristatus strain NCTC13807]
MKVSKMLLATGVVLSAGVFLSACGKSSSSTSTYSYVYASDPDSLNYLTTNRATTSDVITNLVDGLLENDEYGNLVPSLAE
SWTVSQDGLTYTYKLRKDAKWFNVDGEEVASVKAQDFVTGLKYVADQKSEALYLIQDSISGLDAYVKGDEKDFSKVGVKA
IDDYTVQYTLTRPEPYWNSKTTNNILFPVNEEFLKSKGKDFGSVDPSSILYNGPFLLKSLTSKSSMEFVKNPNYYDKDKV
SLEDVKLTYYDGSDQESLIRNFSDGAYSGARLYPNTSGFATVKKKYADNILYSPQDATSYYFNFNFNRQSYNHTSKTSDD
QKNATKEAVLNKDFRQAVNFALDRTAYGAQSNGEDGATKQLRNTLVPPTFVQIGDQTFGQVVASKLVNYGTEWANVDLTD
AQDAYYNPDKAKAKFAKAKEALEAKGVQFPIHLDLPVDQADKVGIQWASSVKQSIESTLGAENVVIDLQKISVDDLNNVT
YFANTAAQKDYDFYTGGWSADYQDPSTYLDTLNVNNGASLQNFGFEPGQDMDKMKDLGLDTYTKMLEEANAETKDVKVRY
EKYADAQAWLLDSGIIMPTISGGGSPSVSKSKPFSRAYSLVGIKGSGFNFKYTKLRSEIVTTKEYEEAKKKWQEKTLESN
QKAQEELADHIEKK

Nucleotide


Download         Length: 1965 bp        

>NTDB_id=1142318 DQN71_RS05915 WP_015605026.1 1136177..1138141(-) (amiA) [Streptococcus cristatus strain NCTC13807]
ATGAAAGTATCAAAAATGCTTTTAGCTACTGGAGTGGTACTTAGTGCAGGCGTGTTCTTGTCAGCTTGTGGCAAATCCTC
ATCTAGTACATCAACGTATTCTTATGTTTATGCCAGCGATCCAGACAGCTTGAACTACCTGACCACTAACCGTGCAACTA
CATCAGACGTTATTACAAACCTTGTAGATGGTCTTTTGGAAAATGATGAATATGGAAATCTAGTTCCTTCTCTTGCGGAA
TCATGGACAGTTTCCCAAGACGGCCTGACTTACACATATAAGCTTCGTAAGGATGCTAAGTGGTTCAATGTTGATGGCGA
AGAAGTTGCAAGTGTGAAAGCTCAAGACTTTGTGACTGGACTTAAATATGTTGCTGACCAAAAGTCTGAAGCCCTTTACC
TGATTCAGGACTCGATTAGTGGCTTAGATGCCTATGTCAAAGGCGACGAAAAAGACTTTTCAAAAGTCGGGGTGAAGGCA
ATAGATGATTATACTGTTCAATACACGCTGACACGCCCAGAGCCTTATTGGAACTCTAAAACTACGAATAATATCTTGTT
CCCTGTCAATGAAGAATTTTTGAAGTCTAAAGGAAAAGATTTTGGTTCTGTTGATCCATCAAGTATTCTTTACAACGGTC
CTTTCCTTTTGAAATCTTTGACTTCTAAATCGTCTATGGAATTCGTTAAAAATCCAAATTATTACGATAAAGACAAGGTC
AGTCTAGAAGATGTCAAATTAACCTACTATGATGGGTCAGACCAAGAATCTTTAATTCGCAACTTCAGCGATGGTGCTTA
TAGCGGTGCTCGTCTCTATCCAAATACTTCAGGATTTGCAACAGTTAAGAAAAAATATGCGGATAATATCCTTTACAGCC
CGCAGGATGCGACCTCATATTATTTTAATTTCAACTTCAATCGTCAATCATACAATCACACTTCCAAAACAAGTGATGAT
CAGAAGAATGCAACAAAAGAAGCAGTCCTAAATAAGGACTTCCGTCAGGCTGTCAATTTTGCCCTTGATCGGACTGCCTA
TGGTGCACAAAGTAATGGTGAAGACGGAGCTACCAAGCAGTTAAGAAATACGCTTGTTCCACCAACATTTGTTCAAATCG
GCGATCAAACATTTGGGCAAGTTGTTGCTTCTAAACTAGTAAATTACGGCACAGAATGGGCCAACGTTGATCTCACTGAC
GCTCAAGATGCCTACTATAACCCAGACAAAGCCAAGGCAAAATTTGCCAAGGCTAAGGAAGCTTTGGAAGCTAAGGGAGT
TCAATTCCCAATTCATTTGGACCTTCCTGTGGACCAGGCTGATAAGGTGGGAATCCAATGGGCAAGCTCAGTGAAACAAT
CCATCGAATCAACCTTGGGTGCAGAAAATGTAGTTATTGACTTGCAGAAGATTAGTGTAGATGATTTGAATAATGTCACC
TATTTTGCCAATACTGCAGCTCAAAAAGATTATGACTTCTACACAGGCGGCTGGTCAGCTGACTATCAAGATCCATCTAC
CTACTTAGATACTCTAAATGTAAATAATGGTGCTAGCTTGCAAAACTTTGGTTTTGAGCCAGGCCAAGATATGGACAAGA
TGAAAGATCTGGGCTTGGATACTTATACCAAGATGTTAGAAGAGGCAAATGCTGAAACAAAAGATGTGAAAGTTCGCTAT
GAAAAATATGCGGATGCGCAAGCTTGGTTGCTTGATAGCGGCATTATCATGCCGACCATTTCAGGAGGCGGTAGTCCTTC
TGTAAGTAAGTCCAAACCTTTCAGTCGTGCTTACTCACTGGTTGGAATCAAGGGATCTGGCTTTAACTTTAAATATACCA
AGCTCAGAAGCGAGATTGTAACGACCAAAGAATATGAAGAAGCTAAGAAAAAATGGCAAGAAAAAACATTGGAATCTAAC
CAAAAAGCCCAAGAAGAACTAGCAGATCATATCGAAAAGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(74-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A512AAG4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

54.878

100

0.55
  amiA3 Streptococcus thermophilus LMG 18311

54.186

100

0.544
  amiA3 Streptococcus thermophilus LMD-9

54.186

100

0.544

Multiple sequence alignment