Detailed information
Bioinformatically predicted
Overview
| Name | comD | Type | Machinery gene |
| Locus tag | DQN30_RS03545 | Genome accession | NZ_LS483458 |
| Coordinates | 695622..696035 (+) | Length | 137 a.a. |
| NCBI ID | WP_111696322.1 | Uniprot ID | A0A2X4R174 |
| Organism | Haemophilus haemolyticus strain NCTC10839 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 690622..701035
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQN30_RS03525 (NCTC10839_00695) | - | 691098..693701 (-) | 2604 | WP_111696318.1 | penicillin-binding protein 1A | - |
| DQN30_RS03530 (NCTC10839_00696) | comA | 693800..694597 (+) | 798 | WP_111696319.1 | pilus assembly protein PilM | Machinery gene |
| DQN30_RS03535 (NCTC10839_00697) | comB | 694598..695107 (+) | 510 | WP_111696320.1 | competence protein B | Machinery gene |
| DQN30_RS03540 (NCTC10839_00698) | comC | 695104..695625 (+) | 522 | WP_111696321.1 | competence protein ComC | Machinery gene |
| DQN30_RS03545 (NCTC10839_00699) | comD | 695622..696035 (+) | 414 | WP_111696322.1 | pilus assembly protein PilP | Machinery gene |
| DQN30_RS03550 (NCTC10839_00700) | comE | 696045..697382 (+) | 1338 | WP_111696323.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| DQN30_RS03555 (NCTC10839_00701) | - | 697395..698081 (+) | 687 | WP_111696324.1 | ComF family protein | - |
| DQN30_RS03560 (NCTC10839_00702) | nfuA | 698157..698753 (+) | 597 | WP_046939969.1 | Fe-S biogenesis protein NfuA | - |
| DQN30_RS03565 (NCTC10839_00703) | nudC | 698821..699615 (+) | 795 | WP_111696325.1 | NAD(+) diphosphatase | - |
| DQN30_RS03570 (NCTC10839_00704) | - | 699651..700241 (+) | 591 | WP_111696326.1 | YjaG family protein | - |
| DQN30_RS03575 (NCTC10839_00705) | - | 700379..700651 (+) | 273 | WP_005634530.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 137 a.a. Molecular weight: 15423.49 Da Isoelectric Point: 4.3115
>NTDB_id=1142189 DQN30_RS03545 WP_111696322.1 695622..696035(+) (comD) [Haemophilus haemolyticus strain NCTC10839]
MKYWFYLSALFFMNCSWGQDPFDKTQRNGSQLDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLSALKLVGVVISKD
KAFALLLDQDLQIYSVLEGVDVAQEGYVVTKINQNKVQFMRKLGAQCDSTEQKELSF
MKYWFYLSALFFMNCSWGQDPFDKTQRNGSQLDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLSALKLVGVVISKD
KAFALLLDQDLQIYSVLEGVDVAQEGYVVTKINQNKVQFMRKLGAQCDSTEQKELSF
Nucleotide
Download Length: 414 bp
>NTDB_id=1142189 DQN30_RS03545 WP_111696322.1 695622..696035(+) (comD) [Haemophilus haemolyticus strain NCTC10839]
ATGAAGTATTGGTTTTACCTGAGTGCATTATTTTTTATGAATTGCAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACGGTTCTCAGCTTGATAACGCACAAACAGTAATGGAACAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCAGCTGAGATTCCTTTGAGCGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCTTTTGCGTTATTGCTGGATCAGGATTTGCAAATTTACAGCGTTTTAGAAGGTGTTGATGTGGCTCAAGAAGGATA
TGTTGTAACAAAAATCAATCAAAATAAAGTTCAATTTATGCGTAAGCTCGGTGCTCAATGTGATAGCACTGAACAGAAAG
AATTAAGTTTTTAA
ATGAAGTATTGGTTTTACCTGAGTGCATTATTTTTTATGAATTGCAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACGGTTCTCAGCTTGATAACGCACAAACAGTAATGGAACAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCAGCTGAGATTCCTTTGAGCGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCTTTTGCGTTATTGCTGGATCAGGATTTGCAAATTTACAGCGTTTTAGAAGGTGTTGATGTGGCTCAAGAAGGATA
TGTTGTAACAAAAATCAATCAAAATAAAGTTCAATTTATGCGTAAGCTCGGTGCTCAATGTGATAGCACTGAACAGAAAG
AATTAAGTTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comD | Haemophilus influenzae 86-028NP |
88.321 |
100 |
0.883 |
| comD | Haemophilus influenzae Rd KW20 |
87.591 |
100 |
0.876 |