Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   DQN30_RS03530 Genome accession   NZ_LS483458
Coordinates   693800..694597 (+) Length   265 a.a.
NCBI ID   WP_111696319.1    Uniprot ID   A0A2X4UFT0
Organism   Haemophilus haemolyticus strain NCTC10839     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 688800..699597
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN30_RS03510 (NCTC10839_00692) recR 689016..689618 (-) 603 WP_005626527.1 recombination mediator RecR -
  DQN30_RS03515 (NCTC10839_00693) - 689681..690010 (-) 330 WP_005629464.1 YbaB/EbfC family nucleoid-associated protein -
  DQN30_RS03520 (NCTC10839_00694) - 690179..691024 (-) 846 WP_111696317.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  DQN30_RS03525 (NCTC10839_00695) - 691098..693701 (-) 2604 WP_111696318.1 penicillin-binding protein 1A -
  DQN30_RS03530 (NCTC10839_00696) comA 693800..694597 (+) 798 WP_111696319.1 pilus assembly protein PilM Machinery gene
  DQN30_RS03535 (NCTC10839_00697) comB 694598..695107 (+) 510 WP_111696320.1 competence protein B Machinery gene
  DQN30_RS03540 (NCTC10839_00698) comC 695104..695625 (+) 522 WP_111696321.1 competence protein ComC Machinery gene
  DQN30_RS03545 (NCTC10839_00699) comD 695622..696035 (+) 414 WP_111696322.1 pilus assembly protein PilP Machinery gene
  DQN30_RS03550 (NCTC10839_00700) comE 696045..697382 (+) 1338 WP_111696323.1 type IV pilus secretin PilQ family protein Machinery gene
  DQN30_RS03555 (NCTC10839_00701) - 697395..698081 (+) 687 WP_111696324.1 ComF family protein -
  DQN30_RS03560 (NCTC10839_00702) nfuA 698157..698753 (+) 597 WP_046939969.1 Fe-S biogenesis protein NfuA -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 31349.60 Da        Isoelectric Point: 5.3299

>NTDB_id=1142186 DQN30_RS03530 WP_111696319.1 693800..694597(+) (comA) [Haemophilus haemolyticus strain NCTC10839]
MQFSLKNHRTLQIGVHRKQGYFDFVWFDELEQPQCYQSSINDSDLKNRFLRHLKTQSQGKIFSLQFVASISAHLTWSKVL
MLPQILNEQECHQQCKFVIEKELPIPLEELWFDYISTPLKQGFRLEITAIREASAQTYLQDFQPFKISVLDVVPHSILRA
FQYLLNEQVWSENTLFLFQEDDYCLAICERSQQSQILQSHENLTALYEQFTERFEGQLEQVFVYQIPSSHTPLPENWQRV
ETDLPFIALGNALWQKDLHQQKVSS

Nucleotide


Download         Length: 798 bp        

>NTDB_id=1142186 DQN30_RS03530 WP_111696319.1 693800..694597(+) (comA) [Haemophilus haemolyticus strain NCTC10839]
ATGCAATTCTCCCTGAAAAATCACCGCACTTTACAAATCGGCGTTCATCGTAAGCAGGGTTATTTTGATTTTGTGTGGTT
TGATGAACTTGAACAGCCACAATGTTATCAATCCTCTATCAATGATAGCGATTTAAAAAATCGTTTTTTGCGACATTTAA
AAACACAATCTCAAGGGAAAATCTTTTCTTTGCAGTTTGTGGCAAGTATTTCTGCTCACTTGACTTGGTCGAAAGTATTA
ATGTTACCGCAAATATTAAATGAGCAAGAATGTCATCAACAATGTAAATTTGTGATTGAGAAAGAGTTGCCCATTCCTTT
AGAGGAATTGTGGTTTGATTATATTTCTACTCCGTTAAAGCAAGGTTTTCGTTTAGAGATTACGGCAATTCGAGAGGCGA
GTGCTCAAACTTATTTGCAAGATTTTCAGCCATTTAAAATTAGTGTGTTAGATGTTGTTCCTCATAGCATCTTGCGTGCA
TTTCAGTATTTGTTGAATGAACAAGTGTGGTCAGAAAATACCTTATTTTTATTTCAAGAAGATGACTATTGCTTGGCGAT
TTGTGAAAGATCTCAGCAATCGCAAATTTTACAATCTCACGAAAATTTGACCGCACTTTATGAGCAATTTACCGAACGTT
TTGAAGGGCAACTTGAACAAGTTTTTGTGTATCAAATTCCCTCAAGTCATACACCATTACCCGAAAACTGGCAGCGAGTA
GAAACAGATTTACCCTTTATCGCTCTTGGCAACGCACTATGGCAAAAAGATTTACATCAACAAAAAGTGAGTAGCTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2X4UFT0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Haemophilus influenzae 86-028NP

86.792

100

0.868
  comA Haemophilus influenzae Rd KW20

86.415

100

0.864

Multiple sequence alignment