Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   DQL01_RS11750 Genome accession   NZ_LS483451
Coordinates   2199559..2200317 (+) Length   252 a.a.
NCBI ID   WP_050087436.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 4041STDY6836166     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2194559..2205317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL01_RS11720 comE 2195156..2195908 (-) 753 WP_000866065.1 competence system response regulator transcription factor ComE Regulator
  DQL01_RS11725 comD/comD2 2195905..2197230 (-) 1326 WP_016397292.1 competence system sensor histidine kinase ComD Regulator
  DQL01_RS11730 comC/comC2 2197251..2197376 (-) 126 WP_000799686.1 competence-stimulating peptide ComC Regulator
  DQL01_RS11740 rlmH 2197658..2198137 (-) 480 WP_061757162.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  DQL01_RS11745 htrA 2198320..2199501 (+) 1182 WP_000681597.1 S1C family serine protease Regulator
  DQL01_RS11750 spo0J 2199559..2200317 (+) 759 WP_050087436.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence

Protein


Download         Length: 252 a.a.        Molecular weight: 29100.45 Da        Isoelectric Point: 8.0022

>NTDB_id=1142109 DQL01_RS11750 WP_050087436.1 2199559..2200317(+) (spo0J) [Streptococcus pneumoniae strain 4041STDY6836166]
MEKFEMISITDIQKNPYQPRKEFDREKLDELAQSIKENGVIQPIIVRQSPVIGYEILAGERRYRASLLAGLRSIPAVVKQ
ISDQEMMVQSIIENLQRENLNPIEEACAYESLVEKGFTHAEIADKMGKSRPYISNSIRLLSLPEQILSEVENGKLSQAHA
RSLVGLNKEQQDYFFQRIIEEDISVRKLEALLTEKKQKKQQKTNHFIQNEEKQLRKLLGLDVEIKLSKKDSGKIIISFSN
QEEYSRIINSLK

Nucleotide


Download         Length: 759 bp        

>NTDB_id=1142109 DQL01_RS11750 WP_050087436.1 2199559..2200317(+) (spo0J) [Streptococcus pneumoniae strain 4041STDY6836166]
ATGGAAAAATTTGAAATGATTTCTATCACAGATATACAAAAAAATCCCTATCAACCCCGAAAAGAATTTGATAGAGAAAA
ACTAGATGAACTAGCACAGTCTATCAAAGAAAATGGGGTCATTCAACCGATTATTGTTCGTCAATCTCCTGTTATTGGTT
ATGAAATCCTTGCAGGAGAGAGACGCTATCGGGCTTCACTTTTAGCTGGTCTACGGTCTATCCCAGCTGTTGTTAAACAG
ATTTCAGACCAAGAGATGATGGTCCAGTCCATTATTGAAAATTTACAGAGAGAAAATTTAAACCCAATAGAAGAAGCATG
CGCCTATGAATCTCTCGTAGAGAAAGGATTCACTCATGCTGAAATTGCAGATAAAATGGGCAAGTCTCGTCCATATATCA
GCAACTCCATTCGTTTACTTTCCTTGCCAGAACAGATTCTCTCAGAAGTAGAAAATGGCAAACTATCACAAGCCCATGCG
CGTTCCCTAGTTGGGTTAAATAAGGAACAACAAGACTATTTCTTTCAACGGATTATAGAAGAAGATATTTCTGTAAGGAA
GTTAGAAGCTCTTCTGACAGAGAAAAAACAAAAGAAACAGCAAAAAACTAATCATTTCATACAAAATGAAGAAAAACAGT
TAAGAAAACTACTCGGATTAGATGTAGAAATTAAACTATCTAAAAAAGACAGTGGAAAAATCATTATTTCTTTTTCAAAT
CAAGAAGAATATAGTAGAATTATCAACAGCCTGAAATAA

Domains

Predicted by InterproScan.

HTH domain found in ParB protein (HTH_ParB)

(144-192)

ParB/Sulfiredoxin domain (ParB_N)

(6-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

50.593

100

0.508

Multiple sequence alignment