Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   DQL01_RS11585 Genome accession   NZ_LS483451
Coordinates   2168655..2169317 (-) Length   220 a.a.
NCBI ID   WP_000649971.1    Uniprot ID   A0A0B7MFB3
Organism   Streptococcus pneumoniae strain 4041STDY6836166     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2163655..2174317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL01_RS11560 - 2163805..2164071 (-) 267 WP_001278167.1 Veg family protein -
  DQL01_RS11565 dnaB 2164073..2165425 (-) 1353 WP_000852486.1 replicative DNA helicase -
  DQL01_RS11570 rplI 2165469..2165921 (-) 453 WP_000864220.1 50S ribosomal protein L9 -
  DQL01_RS11575 - 2165918..2167891 (-) 1974 WP_000715124.1 DHH family phosphoesterase -
  DQL01_RS11580 hpf 2168027..2168575 (-) 549 WP_000599107.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  DQL01_RS11585 comFC/cflB 2168655..2169317 (-) 663 WP_000649971.1 ComF family protein Machinery gene
  DQL01_RS11590 comFA/cflA 2169314..2170612 (-) 1299 WP_000867590.1 DEAD/DEAH box helicase Machinery gene
  DQL01_RS11595 - 2170668..2171303 (+) 636 WP_000395738.1 YigZ family protein -
  DQL01_RS11600 cysK 2171588..2172514 (+) 927 WP_000029865.1 cysteine synthase A -
  DQL01_RS11605 tsf 2172635..2173675 (-) 1041 WP_000808062.1 translation elongation factor Ts -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25241.10 Da        Isoelectric Point: 7.3688

>NTDB_id=1142103 DQL01_RS11585 WP_000649971.1 2168655..2169317(-) (comFC/cflB) [Streptococcus pneumoniae strain 4041STDY6836166]
MKCLLCGQTMKTVLTFSSLLLLRNDDSCLCSDCDSTFERIGEENCPNCMKTELSTKCQDCQLWCKEGVEVSHRAIFTYNQ
AMKDFFSRYKFDGDFLLRKVFASFLSEELKKYKEYQFVVIPLSPDRYANRGFNQVEGLVEAAGFEYLDLLEKREERASSS
KNRSERLGTELPFFIKSGVTIPKKILLIDDIYTTGATINRVKKLLEEAGAKDVKTFSLVR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=1142103 DQL01_RS11585 WP_000649971.1 2168655..2169317(-) (comFC/cflB) [Streptococcus pneumoniae strain 4041STDY6836166]
ATGAAGTGCTTGTTATGTGGGCAGACTATGAAGACTGTTTTAACTTTTAGTAGTCTCTTACTTCTGAGGAATGATGACTC
TTGTCTTTGTTCAGACTGTGATTCTACTTTTGAAAGAATTGGGGAAGAGAACTGTCCAAATTGTATGAAAACAGAGTTGT
CAACAAAGTGTCAAGATTGTCAACTTTGGTGTAAAGAGGGAGTTGAAGTCAGTCATAGAGCGATTTTTACTTACAATCAA
GCTATGAAGGATTTTTTCAGTCGGTATAAGTTTGATGGAGACTTCCTGTTAAGAAAAGTTTTCGCTTCATTTTTAAGTGA
GGAGTTGAAAAAGTACAAAGAGTATCAATTTGTTGTAATTCCCCTAAGTCCTGATAGATATGCTAATAGAGGATTTAATC
AGGTTGAGGGCTTGGTAGAGGCAGCAGGCTTTGAGTATCTGGATTTATTAGAGAAAAGAGAAGAGAGAGCCAGTTCTTCT
AAAAATCGTTCAGAGCGCTTGGGGACAGAACTTCCTTTCTTTATTAAAAGTGGAGTCACTATTCCTAAAAAAATCCTACT
TATAGATGATATCTATACTACAGGAGCAACTATAAATCGTGTTAAGAAACTGTTGGAAGAAGCTGGTGCTAAGGATGTAA
AAACATTTTCCCTTGTAAGATGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(153-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B7MFB3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae TIGR4

100

100

1
  comFC/cflB Streptococcus pneumoniae Rx1

99.545

100

0.995
  comFC/cflB Streptococcus pneumoniae D39

99.545

100

0.995
  comFC/cflB Streptococcus pneumoniae R6

99.545

100

0.995
  comFC/cflB Streptococcus mitis NCTC 12261

91.818

100

0.918
  comFC/cflB Streptococcus mitis SK321

91.364

100

0.914

Multiple sequence alignment