Detailed information NTG0114207

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: HPOKI422_RS00210
• Genome accession: NZ_CP006824
• Coordinates: 37997..38992 (+)
• Length: 331 a.a.
• NCBI ID: WP_025366272.1
• Uniprot ID: -
• Organism: Helicobacter pylori oki422
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 32997..43992

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPOKI422_RS00180 (HPOKI422_00205)	panD	34416..34766 (+)	351	WP_025276548.1	aspartate 1-decarboxylase	-
HPOKI422_RS00185 (HPOKI422_00210)	-	34777..35070 (+)	294	WP_000347915.1	YbaB/EbfC family nucleoid-associated protein	-
HPOKI422_RS00190 (HPOKI422_00215)	-	35070..36065 (+)	996	WP_025275450.1	PDZ domain-containing protein	-
HPOKI422_RS00195 (HPOKI422_00220)	comB6	36073..37128 (+)	1056	WP_025366271.1	P-type conjugative transfer protein TrbL	Machinery gene
HPOKI422_RS00200 (HPOKI422_00225)	comB7	37144..37257 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
HPOKI422_RS00205 (HPOKI422_00230)	comB8	37254..37997 (+)	744	WP_025275452.1	type IV secretion system protein	Machinery gene
HPOKI422_RS00210 (HPOKI422_00235)	comB9	37997..38992 (+)	996	WP_025366272.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HPOKI422_RS00215 (HPOKI422_00240)	comB10	38985..40121 (+)	1137	WP_025276551.1	DNA type IV secretion system protein ComB10	Machinery gene
HPOKI422_RS00220 (HPOKI422_00245)	-	40191..41609 (+)	1419	WP_025276552.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
HPOKI422_RS00225 (HPOKI422_00250)	gmd	41619..42764 (+)	1146	WP_025275456.1	GDP-mannose 4,6-dehydratase	-
HPOKI422_RS00230 (HPOKI422_00255)	-	42757..43689 (+)	933	WP_025275457.1	GDP-L-fucose synthase family protein	-

Sequence

Protein

• Length: 331 a.a.
• Molecular weight: 38078.88 Da
• Isoelectric Point: 9.4493

>NTDB_id=114207 HPOKI422_RS00210 WP_025366272.1 37997..38992(+) (comB9) [Helicobacter pylori oki422]
MRKFLYALMGFLLAFSALKADDFLEEANGTAPAHLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENALENALENAPTNNKPLKEEPLKEEKEETKEKEEETIIIGDNTNAMKIVKKDIQKGYRALKSSQRKW
YCLGICSKKSKPSLMPKEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYL
CIRFVKKGKDE

Nucleotide

• Length: 996 bp

>NTDB_id=114207 HPOKI422_RS00210 WP_025366272.1 37997..38992(+) (comB9) [Helicobacter pylori oki422]
ATGCGGAAATTTTTATATGCCCTCATGGGCTTTTTGTTGGCTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGGAACAGCCCCGGCGCATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGATAAAAACC
GCTCAAAAATGTCCAACACTTTGAACATTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGACGCGAAAATATTAGAAAG
TAACGATCGTATTTTACTCATCAAACCCCTACAAATTGGCGTGGATTCCAATATCAGCGTGATTGATAATGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCTAACGCTTTTATGAAGCCACAAAATAAAGAAAATGCCCTTGAAAATGCCCTTGAAAATGCCCCCACAAACAA
CAAGCCCTTAAAAGAAGAACCCTTAAAAGAAGAAAAAGAAGAAACCAAAGAAAAAGAAGAAGAGACTATAATTATTGGCG
ATAACACTAACGCCATGAAAATCGTTAAAAAAGACATTCAAAAAGGCTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGG
TATTGTTTAGGGATTTGTTCTAAAAAATCCAAACCCTCTTTGATGCCTAAAGAAATTTTTAACGACAAACAATTCACTTA
TTTCAAATTTGACAAAAAATTAGCGCTCTCTAAATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTAA
ATACTAGGATTGTGGGCGATTACATTATCGCTGAAGACGTTTCGGCTAAATGGACTTTAAGGTTGGGCAAGGACTATTTG
TGCATCCGTTTTGTCAAAAAGGGTAAAGATGAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-322)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	94.562	100	0.946