Detailed information NTG0114204

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: HPOKI422_RS00195
• Genome accession: NZ_CP006824
• Coordinates: 36073..37128 (+)
• Length: 351 a.a.
• NCBI ID: WP_025366271.1
• Uniprot ID: -
• Organism: Helicobacter pylori oki422
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 31073..42128

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPOKI422_RS00165 (HPOKI422_00190)	-	31490..31903 (+)	414	WP_001023008.1	universal stress protein	-
HPOKI422_RS00170 (HPOKI422_00195)	-	31926..32201 (+)	276	WP_025276546.1	ATP-dependent Clp protease adaptor ClpS	-
HPOKI422_RS00175 (HPOKI422_00200)	-	32201..34426 (+)	2226	WP_025366270.1	AAA family ATPase	-
HPOKI422_RS00180 (HPOKI422_00205)	panD	34416..34766 (+)	351	WP_025276548.1	aspartate 1-decarboxylase	-
HPOKI422_RS00185 (HPOKI422_00210)	-	34777..35070 (+)	294	WP_000347915.1	YbaB/EbfC family nucleoid-associated protein	-
HPOKI422_RS00190 (HPOKI422_00215)	-	35070..36065 (+)	996	WP_025275450.1	PDZ domain-containing protein	-
HPOKI422_RS00195 (HPOKI422_00220)	comB6	36073..37128 (+)	1056	WP_025366271.1	P-type conjugative transfer protein TrbL	Machinery gene
HPOKI422_RS00200 (HPOKI422_00225)	comB7	37144..37257 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
HPOKI422_RS00205 (HPOKI422_00230)	comB8	37254..37997 (+)	744	WP_025275452.1	type IV secretion system protein	Machinery gene
HPOKI422_RS00210 (HPOKI422_00235)	comB9	37997..38992 (+)	996	WP_025366272.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HPOKI422_RS00215 (HPOKI422_00240)	comB10	38985..40121 (+)	1137	WP_025276551.1	DNA type IV secretion system protein ComB10	Machinery gene
HPOKI422_RS00220 (HPOKI422_00245)	-	40191..41609 (+)	1419	WP_025276552.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39796.74 Da
• Isoelectric Point: 9.0413

>NTDB_id=114204 HPOKI422_RS00195 WP_025366271.1 36073..37128(+) (comB6) [Helicobacter pylori oki422]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALLESLWFVGFFALFNY
ALKNPSRFYELFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSMWLFLSILQALFLSVL
FAIIILVYLEVHVWCSLGALFLAFGFFKTWRSVVVICLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTSPAPSSVSPSTSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=114204 HPOKI422_RS00195 WP_025366271.1 36073..37128(+) (comB6) [Helicobacter pylori oki422]
ATGAAAAATGACGCTTATGAGATTATTCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTCCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTACAGAAGTT
TGAAAGAACAGAATTTCTTCAGCGCTAGCGCGCTTTTAGAATCGTTATGGTTTGTGGGGTTTTTTGCACTTTTTAACTAC
GCTTTAAAAAACCCTTCGCGCTTTTATGAATTGTTTCAAAACGCTATTTTTATTGCACCTAACATGATCACTCAAAGCCT
TTCTCAAAGCTTGAGTAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCCATGTGGCTTTTTTTAAGTATTTTGCAAGCGCTTTTTTTGAGCGTTCTG
TTTGCGATCATCATTTTAGTGTATTTGGAAGTGCATGTGTGGTGCTCTTTAGGGGCGCTGTTTTTAGCGTTTGGGTTTTT
CAAAACCTGGAGAAGCGTTGTGGTTATATGCCTAAAAAAGTGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAACGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAATAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCAGCCAAAACGCTCTCAATTCCTTACAATATATCA
CGACCTCGCCCGCTCCCTCTAGCGTTTCTCCTTCTACAAGCGGTAGCGTTTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAAGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	95.157	100	0.952