Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   DQL20_RS07205 Genome accession   NZ_LS483444
Coordinates   1352999..1355005 (-) Length   668 a.a.
NCBI ID   WP_006595994.1    Uniprot ID   -
Organism   Streptococcus australis strain NCTC13166     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1347999..1360005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL20_RS07195 (NCTC11371_01405) trxA 1349405..1349719 (-) 315 WP_006595996.1 thioredoxin -
  DQL20_RS07200 (NCTC11371_01406) - 1349813..1352884 (-) 3072 WP_006595995.1 CocE/NonD family hydrolase -
  DQL20_RS07205 (NCTC11371_01407) amiA3 1352999..1355005 (-) 2007 WP_006595994.1 peptide ABC transporter substrate-binding protein Regulator
  DQL20_RS07210 (NCTC11371_01408) trpA 1355115..1355900 (-) 786 WP_006595993.1 tryptophan synthase subunit alpha -
  DQL20_RS07215 (NCTC11371_01409) trpB 1355903..1357105 (-) 1203 WP_006595992.1 tryptophan synthase subunit beta -
  DQL20_RS07220 (NCTC11371_01410) - 1357102..1357683 (-) 582 WP_006595991.1 phosphoribosylanthranilate isomerase -
  DQL20_RS07225 (NCTC11371_01411) trpC 1357670..1358437 (-) 768 WP_006595990.1 indole-3-glycerol phosphate synthase TrpC -
  DQL20_RS07230 (NCTC11371_01412) trpD 1358434..1359438 (-) 1005 WP_006595989.1 anthranilate phosphoribosyltransferase -

Sequence

Protein


Download         Length: 668 a.a.        Molecular weight: 74298.53 Da        Isoelectric Point: 4.6841

>NTDB_id=1141749 DQL20_RS07205 WP_006595994.1 1352999..1355005(-) (amiA3) [Streptococcus australis strain NCTC13166]
MKKRNVIALAGVALLSAGILAACSGGSKSSSSSSSSKSSEAGQKFSYVYETEPENLNYITSGKAATHEITGNLIDGLFEN
DKYGNLIPSLAKDWTVSEDGLTYTYKLRDDAKWYDSEGEEYADVTADDFVAGIKYAADHKSEMLYIIQNSIKGLNDYVEG
KTSDFKNVGIKAVDDHTLQITLNQAEPFWNSKLTLGITFPINEKFVESKGDKFAQASDTSSLLYNGPYILKSFTSKSSIE
MSKNENYWDKDNVHITDVKLEYYDGQDQSKLANSFEDNALSLAKLFPTGPGFTDQAKKFKDEIIYTPQDASTFVIGVNID
RQSYKYTAKTTDEEKSSTKKALLNKDFRQAISFAFDRESYAAQANGKDGASKLIRNLYIPPTFVQADGKTFGEMVKSELV
TYGDEWKDANLDDGQNGLYNEKQAKEEFAKAKSALEADGVKFPIHLDMPVDQTTQSKVQRAQSFKQSVESTLGKENVVVD
IHMVSKEDLLNVTLFAAKAEDEDWDISDNVGWSPDYQDPSTYLDILKASSGENTRTFLGFDPSENNEAAKKVGLYDFEKM
VTEAGAETQDLNKRYEKYAAAQAWLTDSALVIPTTSKTGRPFLTRVVPFSAPFGWTGGKGKDNVVYKGMELQDKPVTTED
YNKALEKWKKEQAESNQKAQEELKDHVK

Nucleotide


Download         Length: 2007 bp        

>NTDB_id=1141749 DQL20_RS07205 WP_006595994.1 1352999..1355005(-) (amiA3) [Streptococcus australis strain NCTC13166]
ATGAAAAAAAGAAATGTCATTGCTCTTGCAGGAGTAGCTCTTCTTTCAGCAGGTATTCTTGCAGCATGTTCCGGTGGTTC
TAAATCATCAAGCTCAAGCTCAAGCTCAAAATCAAGTGAAGCAGGTCAAAAATTCTCTTACGTCTATGAGACAGAACCTG
AAAACTTGAACTACATCACATCTGGTAAAGCTGCAACCCATGAAATCACAGGAAACTTGATCGATGGATTGTTTGAAAAC
GACAAGTATGGAAATTTGATTCCTTCACTTGCTAAAGATTGGACAGTTTCAGAAGATGGCTTGACTTATACTTACAAACT
TCGTGATGATGCCAAATGGTATGATTCAGAAGGGGAAGAGTATGCGGACGTGACGGCAGATGACTTCGTTGCAGGTATCA
AATATGCTGCTGACCACAAGTCTGAAATGCTCTACATCATTCAAAACTCTATCAAGGGCTTGAATGATTATGTTGAAGGT
AAGACTTCAGACTTCAAAAATGTAGGCATTAAAGCAGTCGATGATCATACCCTTCAAATCACTTTGAACCAAGCAGAGCC
TTTCTGGAATTCTAAGTTGACTCTTGGAATCACTTTCCCAATCAACGAGAAGTTCGTAGAATCTAAAGGGGATAAATTTG
CCCAAGCAAGTGACACGAGTTCCCTTCTTTACAATGGTCCATACATCTTGAAGAGCTTTACTTCTAAATCATCTATCGAG
ATGAGCAAGAATGAAAACTACTGGGATAAGGACAACGTTCACATCACAGATGTTAAGCTAGAGTACTATGATGGTCAAGA
CCAAAGTAAATTGGCTAACTCATTTGAGGACAACGCTCTTAGCCTTGCTAAATTGTTCCCGACTGGACCTGGATTTACAG
ACCAAGCTAAGAAGTTTAAAGATGAGATCATCTACACTCCTCAAGATGCCAGCACCTTCGTTATCGGTGTGAATATCGAC
CGTCAGTCTTACAAGTACACTGCAAAAACAACAGATGAAGAAAAATCATCTACTAAGAAAGCTCTTTTGAACAAAGACTT
CCGTCAAGCAATCAGCTTTGCCTTTGACCGTGAATCTTATGCTGCTCAAGCAAATGGTAAAGATGGAGCAAGCAAACTGA
TCCGTAACTTGTACATCCCACCTACATTCGTTCAAGCAGATGGCAAGACCTTCGGTGAGATGGTTAAATCTGAGTTGGTG
ACTTATGGAGACGAGTGGAAAGATGCAAATCTTGACGATGGTCAGAATGGTCTTTACAACGAAAAACAAGCTAAAGAAGA
GTTTGCAAAAGCAAAATCTGCACTTGAAGCAGACGGTGTGAAATTCCCAATCCACTTGGATATGCCAGTTGACCAAACGA
CTCAATCTAAGGTTCAACGTGCTCAATCTTTCAAACAATCGGTTGAAAGTACGCTTGGAAAAGAAAACGTCGTTGTCGAC
ATCCATATGGTATCCAAAGAAGACCTCTTGAACGTGACGCTCTTTGCTGCTAAAGCAGAAGACGAAGACTGGGATATCTC
AGATAACGTTGGTTGGAGCCCAGACTATCAAGACCCATCAACTTACCTTGATATCTTGAAAGCTTCTTCTGGTGAAAACA
CTCGTACCTTCCTTGGATTTGACCCAAGCGAAAACAATGAGGCAGCTAAGAAAGTTGGCTTGTACGACTTTGAGAAGATG
GTAACAGAAGCAGGAGCTGAAACACAAGACCTTAACAAACGTTATGAGAAATATGCTGCAGCTCAAGCTTGGTTGACGGA
TAGTGCTTTGGTCATCCCAACTACTTCTAAGACTGGTCGTCCATTCTTGACTCGTGTCGTACCATTCTCAGCACCATTTG
GCTGGACTGGTGGTAAAGGGAAAGACAACGTTGTCTACAAAGGTATGGAACTTCAAGATAAGCCTGTAACAACCGAAGAC
TACAACAAAGCTCTTGAAAAATGGAAGAAAGAGCAAGCAGAGTCTAACCAAAAAGCTCAAGAAGAATTAAAAGATCACGT
GAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(86-532)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

56.203

100

0.563
  amiA3 Streptococcus thermophilus LMG 18311

56.054

100

0.561
  amiA Streptococcus salivarius strain HSISS4

55.904

100

0.56

Multiple sequence alignment