Detailed information NTG0114170

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: HPOKI128_RS05950
• Genome accession: NZ_CP006822
• Coordinates: 1245839..1246801 (+)
• Length: 320 a.a.
• NCBI ID: WP_025223378.1
• Uniprot ID: -
• Organism: Helicobacter pylori oki128
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1240839..1251801

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPOKI128_RS05920 (HPOKI128_06125)	panD	1242258..1242608 (+)	351	WP_025288488.1	aspartate 1-decarboxylase	-
HPOKI128_RS05925 (HPOKI128_06130)	-	1242619..1242912 (+)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
HPOKI128_RS05930 (HPOKI128_06135)	-	1242912..1243907 (+)	996	WP_025288489.1	PDZ domain-containing protein	-
HPOKI128_RS05935 (HPOKI128_06140)	comB6	1243915..1244970 (+)	1056	WP_025223380.1	P-type conjugative transfer protein TrbL	Machinery gene
HPOKI128_RS05940 (HPOKI128_06145)	comB7	1244986..1245099 (+)	114	WP_001217868.1	hypothetical protein	Machinery gene
HPOKI128_RS05945 (HPOKI128_06150)	comB8	1245096..1245839 (+)	744	WP_025223379.1	type IV secretion system protein	Machinery gene
HPOKI128_RS05950 (HPOKI128_06155)	comB9	1245839..1246801 (+)	963	WP_025223378.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HPOKI128_RS05955 (HPOKI128_06160)	comB10	1246794..1247930 (+)	1137	WP_025223377.1	DNA type IV secretion system protein ComB10	Machinery gene
HPOKI128_RS05960 (HPOKI128_06165)	-	1248000..1249412 (+)	1413	WP_025288490.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
HPOKI128_RS05965 (HPOKI128_06170)	gmd	1249426..1250571 (+)	1146	WP_025288491.1	GDP-mannose 4,6-dehydratase	-
HPOKI128_RS05970 (HPOKI128_06175)	-	1250564..1251496 (+)	933	WP_025288492.1	GDP-L-fucose synthase family protein	-

Sequence

Protein

• Length: 320 a.a.
• Molecular weight: 36862.47 Da
• Isoelectric Point: 9.2454

>NTDB_id=114170 HPOKI128_RS05950 WP_025223378.1 1245839..1246801(+) (comB9) [Helicobacter pylori oki128]
MRKVLCTLVGFLLFFSALKADDFLEEANETAPTNLNHPMQDLNAIQGSFFDKNRSKMSNTLNVDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKVFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQIQENTLENAPKNNKPLKEEKEETKEEETITIGDSTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKSK
LSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFIKKGKDE

Nucleotide

• Length: 963 bp

>NTDB_id=114170 HPOKI128_RS05950 WP_025223378.1 1245839..1246801(+) (comB9) [Helicobacter pylori oki128]
ATGCGTAAGGTTTTATGCACTCTTGTGGGCTTTTTGTTGTTTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCCACGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGATAAAAACC
GCTCAAAAATGTCCAACACTTTGAATGTTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTATTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCCAATATCAGCGTGATTGATAATGAGGGTAAGG
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAC
TATTATTCCAACGCTTTTATGAAGCCACAAATTCAAGAAAATACCCTTGAAAATGCCCCCAAAAACAACAAACCCTTAAA
AGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACGATTGGCGATAGCACGAATGCAATGAAAATCGTTAAAAAAG
ACATTCAAAAAGGCTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCCAAA
CTCTCTTTGATGCCTGAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTCTAA
ATTCCCGGTGATTTATAAAGTTGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCGATTATATTATCGCTG
AAGATGTCTCGGCTAAATGGACTTTAAGGCTGGGCAAGGACTATTTGTGTATCCGTTTTATCAAAAAGGGTAAAGATGAA
TAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-311)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	90.798	100	0.925