Detailed information NTG0114167

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: HPOKI128_RS05935
• Genome accession: NZ_CP006822
• Coordinates: 1243915..1244970 (+)
• Length: 351 a.a.
• NCBI ID: WP_025223380.1
• Uniprot ID: -
• Organism: Helicobacter pylori oki128
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1238915..1249970

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPOKI128_RS05905 (HPOKI128_06110)	-	1239338..1239751 (+)	414	WP_025288486.1	universal stress protein	-
HPOKI128_RS05910 (HPOKI128_06115)	-	1239771..1240046 (+)	276	WP_000784933.1	ATP-dependent Clp protease adaptor ClpS	-
HPOKI128_RS05915 (HPOKI128_06120)	-	1240046..1242268 (+)	2223	WP_025288487.1	AAA family ATPase	-
HPOKI128_RS05920 (HPOKI128_06125)	panD	1242258..1242608 (+)	351	WP_025288488.1	aspartate 1-decarboxylase	-
HPOKI128_RS05925 (HPOKI128_06130)	-	1242619..1242912 (+)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
HPOKI128_RS05930 (HPOKI128_06135)	-	1242912..1243907 (+)	996	WP_025288489.1	PDZ domain-containing protein	-
HPOKI128_RS05935 (HPOKI128_06140)	comB6	1243915..1244970 (+)	1056	WP_025223380.1	P-type conjugative transfer protein TrbL	Machinery gene
HPOKI128_RS05940 (HPOKI128_06145)	comB7	1244986..1245099 (+)	114	WP_001217868.1	hypothetical protein	Machinery gene
HPOKI128_RS05945 (HPOKI128_06150)	comB8	1245096..1245839 (+)	744	WP_025223379.1	type IV secretion system protein	Machinery gene
HPOKI128_RS05950 (HPOKI128_06155)	comB9	1245839..1246801 (+)	963	WP_025223378.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HPOKI128_RS05955 (HPOKI128_06160)	comB10	1246794..1247930 (+)	1137	WP_025223377.1	DNA type IV secretion system protein ComB10	Machinery gene
HPOKI128_RS05960 (HPOKI128_06165)	-	1248000..1249412 (+)	1413	WP_025288490.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39881.85 Da
• Isoelectric Point: 8.8165

>NTDB_id=114167 HPOKI128_RS05935 WP_025223380.1 1243915..1244970(+) (comB6) [Helicobacter pylori oki128]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALLEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSFKETYKLATNLSANLSQNALNSLQYITTPPASSPISTSTRESASKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=114167 HPOKI128_RS05935 WP_025223380.1 1243915..1244970(+) (comB6) [Helicobacter pylori oki128]
ATGAAAAATGACGCTTATGAAATTATTCTTTCTTGGTTTATCACACCTCTCACGGCGATTTTAGGGCGTTTTGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGCT
TGAAAGAACAGAATTTCTTCAGCGCCAGCGCGCTTTTAGAAGCGTTATTGTTTGTGGGGTTTTTTGCACTCTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCACACAGAGCCT
CTCTCAAAGCTTGAGTAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTGGGGGTGCTATTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTTGCATGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAACGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CTTTAAAGAAACTTACAAACTCGCTACCAATTTGAGCGCCAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTCCTATTTCTACTTCTACAAGAGAAAGCGCCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	96.581	100	0.966